RNA id: TU147893


Basic Information

Item Value
RNA id TU147893
length 1782
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G125119
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1686319 ~ 1696261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atctctctctctctctctctctctctctctctgtctccctctatcATTCCTTCTCTCTATATATCACTGTTCCTGTCTCTGGTAGTGATGTGTCCTTCACAAAAGAGTCGGCTCACAACATTCACTTAAAAGAGCCGACTCGTTTTTGtgaatctttttattttattgtttttattatttttattttttgtagatcTATGCCATTCTGTTATTTGTGCAGTGTAATTTATTGACGTtgtcataattattattattattattattattttaaaagaaaaaaacccttcttACTGATCAAAATATCACAGAAGGTCAATGAATCATTTGGGAGCCGAAAAGAGTCAACTCTTAATggtgagctgagccaaatgattTGACTCACTGATTTGATTCGTGGATAGTGTGTGTTCTTGAAACATCCTGTTCCTCTTTATCTTCctctcatttttttgtgttcgTACACAACAACAATGTCAATCTCTCGAGGATGAACAGTCAGTGTGTGAAAAATGgcattatggggaaaaaaacagatgtttatGGACGTTTTAGAAGAACGTGTGTGCTATTTTTCTTCACAAGTCTAAAAATGAAtcgtttttttttacagtgtcaTAAATGATCCATTGACACCGACCACCAAAGAGCTTCTCTGTTaccacgtacacacacacacacaaacacacacacacacacacgctagtTCTGTTGTCGCTGTGCCAGTGGTCGTGTCGCCTGCATGCTACTTCAATGTTTCCCTGTAAATAGATTTAACTTATTTTCTATAGGAATGATGGGTAATTTATTGTCTCGTTATTTATGGATAGAGCAGTATTATGATTAGCGACGGGACTCTGTCTCGTACGTGACGCTCTCGTGACTGTGGAAACGTCGACTCCTTCCATTCCACGTGCCAATTCATTACTTAGGTCCCTGTTTTGCTGAAGGACGGAGATTCCTGCAACAACAAAGGAATTAATTACACTTGATTCACTGATTTCAAGCTGGATAACATTAGCTCTtctagtgttagctagctaGTTAGCAAATCCTGGTTTAAACTACACAATGGttagctttttttaatgaatttggcTAGCTACAAGCTAACTCTAGCTACAGCTAGAGGAGTGAAATAATGTTACATGTTTTATCAGTGTGCTAAAATACAGTATTGCGATGTGAGAGTGTAAATATCGGCACACGACTTCATACATTCATAGATGTTTTGGTCACATGGTGAAGGAAGGCgtgatgaatattcatgagcaaACGGCGCCTGCTCACGCCGCATCGTTAACCTCCGAACGCGAGGGTCATTTttgtacattacatttttatacatctACAAGCTCTGACATCGTGTGTGTTCTCACGcggggggggggtgggggttgtAGGGGGCGGGGCATCCATCAGTGTCGGGTTGTGTGCACGCTAAACCCACGATGTTCCGTGCTTGTTGATATTTCTGCATCTTTTCTATCTCGATGTTGTGTCCGTTTCTTACTTTGCCGACTGTGACGATGATGTTCGTTAGCTAATCGATggataatattaataatagatagatagataaataaagcGTTGTGTGTTCGACGGAGAAGAAAAACTCGTCCTGCCGAGTCGTGTGTAAACGTGGAGTGAACTATGATGCTCGTAAACGATGCTCTTGTTTCTATTTCTGTACAACACTTTGGTGATGATGTCATAACTTGGTTTTATAAACCACGCCTATTTTTAAAACCTGCCTCCGGCTCTGAgttttttatttcagcacaC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04721 Synaptic vesicle cycle
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147886 lncRNA upstream 63314 1621257 ~ 1623005 (+) True G125117
TU147885 lncRNA upstream 67449 1617620 ~ 1618870 (+) True G125116
TU147866 lncRNA upstream 93426 1543836 ~ 1592893 (+) False G125098
TU147867 lncRNA upstream 93426 1545694 ~ 1592893 (+) False G125098
TU147865 lncRNA upstream 93426 1591983 ~ 1592893 (+) True G125098
TU147909 lncRNA downstream 66043 1762304 ~ 1763325 (+) False G125129
TU147910 lncRNA downstream 66043 1762304 ~ 1763325 (+) True G125129
TU147928 lncRNA downstream 115093 1811354 ~ 1813285 (+) True G125144
TU148000 lncRNA downstream 264343 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA downstream 270405 1966666 ~ 1987569 (+) False LOC113535242
XM_034306820.1 mRNA upstream 105592 1562749 ~ 1580727 (+) True lhx4
XM_034306746.1 mRNA upstream 147465 1515223 ~ 1538854 (+) True qsox1
XM_034306742.1 mRNA upstream 184930 1475101 ~ 1501389 (+) False cep350
XM_034306844.1 mRNA downstream 4727 1700988 ~ 1726361 (+) True sin3b
XM_034306302.1 mRNA downstream 30547 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA downstream 30598 1726859 ~ 1753281 (+) False def6a
XM_026928023.2 mRNA downstream 59264 1755525 ~ 1759336 (+) True ndufb11
XM_026928020.2 mRNA downstream 63727 1759988 ~ 1765042 (+) True rhoaa
TU147818 other upstream 339734 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 580032 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 869662 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 107236 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 180780 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 519841 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2399008 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2524423 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile