RNA id: TU148033


Basic Information

Item Value
RNA id TU148033
length 276
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G125239
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2059317 ~ 2256786 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATTCATACTCACTCCCCAGTTCACACATTACGctcttcaGATCCTGGTCTACTGTTAACTCCACGCCACAGGTTAGCATCGTTTGGTGGACGAGTGTTTTGTCTCTCTGCCCCCACACTCTGGAATTCTCTTCCCAAAAACGTACgtgatctttcttcattacaGGATTTCAAACCCTAccttaaaacacatctttttctttcttgtttttctgatctctGACTGGATGATCTGATTCATGCCGTGGATTTCTTGTTCATTTCCTTTTgttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148000 lncRNA upstream 65913 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA upstream 71748 1966666 ~ 1987569 (+) False LOC113535242
TU147928 lncRNA upstream 246032 1811354 ~ 1813285 (+) True G125144
TU147909 lncRNA upstream 295992 1762304 ~ 1763325 (+) False G125129
TU147910 lncRNA upstream 295992 1762304 ~ 1763325 (+) True G125129
TU148110 lncRNA downstream 4565 2261351 ~ 2265524 (+) True G125306
TU148117 lncRNA downstream 23426 2280212 ~ 2313941 (+) False G125308
XR_004578585.1 lncRNA downstream 27663 2284449 ~ 2286416 (+) True LOC117597827
TU148160 lncRNA downstream 46162 2302948 ~ 2303492 (+) True G125344
TU148116 lncRNA downstream 50026 2306812 ~ 2313941 (+) True G125308
XM_034306345.1 mRNA upstream 71745 1877028 ~ 1987572 (+) True LOC113535242
XM_034306347.1 mRNA upstream 71745 1877028 ~ 1987572 (+) False LOC113535242
XM_034306346.1 mRNA upstream 71745 1877028 ~ 1987572 (+) False LOC113535242
XM_034306349.1 mRNA upstream 71745 1877028 ~ 1987572 (+) False LOC113535242
XM_034306348.1 mRNA upstream 71745 1877028 ~ 1987572 (+) False LOC113535242
XM_034306736.1 mRNA downstream 32665 2289451 ~ 2304783 (+) True tab3
XM_034306737.1 mRNA downstream 32860 2289646 ~ 2304783 (+) False tab3
XM_026928058.2 mRNA downstream 80555 2337341 ~ 2347459 (+) False prrg1
XM_026928059.2 mRNA downstream 80758 2337544 ~ 2347459 (+) True prrg1
XM_034306596.1 mRNA downstream 104168 2360954 ~ 2366245 (+) True ccdc181
TU147950 other upstream 127899 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 252527 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 712732 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 953030 1103735 ~ 1106287 (+) False lonrf1l
TU147173 other upstream 1242660 792519 ~ 816657 (+) False dennd2da
XR_004578620.1 other downstream 1838483 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 1963898 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 2486453 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 4499977 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 4499977 6756763 ~ 6796076 (+) False phf19

Expression Profile