RNA id: TU148315


Basic Information

Item Value
RNA id TU148315
length 1866
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G125484
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2705841 ~ 2745563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtatataatatctcaatataaatacacctgttcctggaagaacccagagtttgcTGGAGAACATACCTAATCGCACAGCAGCGTGAAGACCTGGCCATGAAGGAGCTACCAAACCAGATCCACTGACAGCCAGTGAGCGGGTGAAGAGAGACCAAGGGGATGGAGAGAGCCACAGCTCAGAGGGGAGAAGGATAATCACAAAGCTGGACTTTATGGAAAAGTgatgagaagaaaaaataagaaaaggaaaaaaaaatcagaatattgGAGACTTAACAAAAGTTCTCTAGTCTGATAAGACCAAAGGTGAATTTTTCAGCCTTGGCACTAAAACAACAtcgctcatcaccctgagaaagCCATCcctactgtgaagcatggtggtggcagcatcatgttcgGCGTTCCCCTCGgtctcttggttgcttctctgactaatctcTTTTTTATCCCTCTTTTCACTGGCTTTCGGTGGATGTTCTCATCCTCGAGGCAGAGCtgcagttgtgccatattctttccatttattttttaaataatggcttTAAATGTTGCTCTGCAGGATGTctgggatatttttttataatcaaatgttgcttgatacttttccagaactctGTCCTGGATTTCTTTTGATTGCTGCTTGGTTTTCATGATGCTGTGTTttggtatgttctctaacacactctaGAGATCCTGAGATATTGTAGATGCGACTTCTGATGGCGACTGGCTGCACcggaactaatttaggggttttcCATACTCCGGTGCTTcacctttgtgttttatttgtaaataattttatgaaCTATATATAGATATTCCCTGCCgttcaatattatgggctattttgtaaAGATTGATGACATGATCCCAGTTAAggccatttcagttccaggttgtagcAGTACAAAACGTGAAAAAggtcaagggggtgaatacttatgcaatgcGTTTGCACATTATTCATCGAAATAAAGGTTAAGTCGAAGACCGAGTCATGCTTCCATTTGAACAACAGAATAAATGTAACTTGAACactaactacatttttaaaatctgtttatctgttaaAAGGTTAAATGGTAAGGATGGGATGATGAGTCTTAAGCGTTTACTTAACTTCAAAATTCAAACCCCTTGagtcaaattttaattttaaagttctCTATTAGTTAATGCGATTCTCTATAATCTTGCGTTGCTGCCATTTTATTTGATCAGTCAACAATAAAACGTGcaccttcctccctccctcacgAATCACGCGTTGCTGCTTACTGCCCCGCCCCCTCATCTGATGGACAGCTGTGATCCTCCTACTCTTCTGGAAGCTGATGAAAGCTCGAGGCATGTGGACGGCCCTCAAGCAGTTCGGACGAAGAATTTAGAAATGAATCGTCCCAAAACAGGAGGGAATAGACATGTAAAGAGAGGAAGAAGTGCGTAGGTGCACTAAAGTTATTTCCATATTTATGCAAACCAGGTCGTTTTATTTGGGTCAAACCTTCTCTCTTTGTGCCTTtgattagttttaaaaaaacaaatgaaaacgttaaaagtctttaaaaaaaaaaaaacacacacacacccccacacacacacacacacccacacacacacacacacacccacctgtcGAGCAGCAGCTGCAGGACGTTGTGTGTGCCGGCGAAGGCTCTGTAGGTGGACAGGAAGATGCTGGTGTAGGTGAGATCGTTATCACCGAAAGCTGTGAGCAGAGTCTCCACGAGCCGCTCCAGCGTCCCTGCACGAATACTGCGGATCTTACACGTCTCTAACTGACTGACTGTGTGACCCGGGGGCAACCGATCGCCCTCCGCCTGAGacagggagcgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148313 lncRNA upstream 29850 2672943 ~ 2675991 (+) True G125483
TU148329 lncRNA upstream 54589 2649689 ~ 2651252 (+) False G125497
TU148331 lncRNA upstream 54589 2649689 ~ 2651252 (+) True G125497
TU148151 lncRNA upstream 273192 2431726 ~ 2432649 (+) True G125337
TU148146 lncRNA upstream 279510 2421558 ~ 2426331 (+) True G125332
TU148431 lncRNA downstream 100146 2845709 ~ 2877146 (+) False LOC113535041
TU148429 lncRNA downstream 103336 2848899 ~ 2877146 (+) False LOC113535041
TU148442 lncRNA downstream 109194 2854757 ~ 2855775 (+) True G125593
TU148427 lncRNA downstream 129759 2875322 ~ 2912384 (+) False LOC113535041
TU148482 lncRNA downstream 248287 2993850 ~ 3227664 (+) True G125626
XM_034306562.1 mRNA upstream 1778 2694963 ~ 2704063 (+) True ptgesl
XM_034306597.1 mRNA upstream 63235 2640711 ~ 2642606 (+) True LOC117597819
XM_026928242.2 mRNA upstream 286886 2409325 ~ 2418955 (+) True mpnd
XM_026927927.2 mRNA upstream 316896 2369339 ~ 2388945 (+) True fsd1
XM_034306596.1 mRNA upstream 339596 2360954 ~ 2366245 (+) True ccdc181
XM_026928129.2 mRNA downstream 151736 2897299 ~ 2906546 (+) True npl
XM_026928126.2 mRNA downstream 161162 2906725 ~ 2910360 (+) True LOC113535040
XM_034306258.1 mRNA downstream 166158 2911721 ~ 2918231 (+) False LOC113535041
XM_026928128.2 mRNA downstream 166158 2911721 ~ 2918231 (+) False LOC113535041
XM_026928127.2 mRNA downstream 166387 2911950 ~ 2918231 (+) True LOC113535041
XR_003403572.2 other upstream 473701 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 774423 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 899051 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 1359256 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 1599554 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 1349706 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 1475121 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1997676 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 4011200 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 4011200 6756763 ~ 6796076 (+) False phf19

Expression Profile