Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU148427 |
| length | 454 |
| lncRNA type | read_through |
| GC content | 0.45 |
| exon number | 2 |
| gene id | LOC113535041 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 2845709 ~ 2918231 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU148442 | lncRNA | upstream | 19547 | 2854757 ~ 2855775 (+) | True | G125593 |
| TU148315 | lncRNA | upstream | 129759 | 2705841 ~ 2745563 (+) | True | G125484 |
| TU148365 | lncRNA | upstream | 133038 | 2741998 ~ 2742284 (+) | True | G125525 |
| TU148348 | lncRNA | upstream | 153440 | 2719032 ~ 2721882 (+) | True | G125509 |
| TU148346 | lncRNA | upstream | 153440 | 2720315 ~ 2721882 (+) | False | G125509 |
| TU148482 | lncRNA | downstream | 81466 | 2993850 ~ 3227664 (+) | True | G125626 |
| TU148573 | lncRNA | downstream | 424037 | 3336421 ~ 3338476 (+) | False | znf692 |
| TU148612 | lncRNA | downstream | 532631 | 3445015 ~ 3458860 (+) | False | acsbg2 |
| TU148610 | lncRNA | downstream | 542933 | 3455317 ~ 3477053 (+) | False | acsbg2 |
| TU148607 | lncRNA | downstream | 563937 | 3476321 ~ 3491140 (+) | False | acsbg2 |
| XM_034306562.1 | mRNA | upstream | 171259 | 2694963 ~ 2704063 (+) | True | ptgesl |
| XM_034306597.1 | mRNA | upstream | 232716 | 2640711 ~ 2642606 (+) | True | LOC117597819 |
| XM_026928242.2 | mRNA | upstream | 456367 | 2409325 ~ 2418955 (+) | True | mpnd |
| XM_026927927.2 | mRNA | upstream | 486377 | 2369339 ~ 2388945 (+) | True | fsd1 |
| XM_034306596.1 | mRNA | upstream | 509077 | 2360954 ~ 2366245 (+) | True | ccdc181 |
| XM_026928605.2 | mRNA | downstream | 8482 | 2920866 ~ 2926332 (+) | True | sec22bb |
| XM_026928606.2 | mRNA | downstream | 8483 | 2920867 ~ 2926332 (+) | False | sec22bb |
| XM_034306697.1 | mRNA | downstream | 39037 | 2951421 ~ 3031725 (+) | True | notch2 |
| XM_026928255.2 | mRNA | downstream | 123845 | 3036229 ~ 3055064 (+) | True | slc35a3a |
| XM_026928256.2 | mRNA | downstream | 127564 | 3039948 ~ 3055064 (+) | False | slc35a3a |
| XR_003403572.2 | other | upstream | 643182 | 2216102 ~ 2232140 (+) | False | alkal1 |
| TU147950 | other | upstream | 943904 | 1877041 ~ 1931418 (+) | False | LOC113535242 |
| TU147915 | other | upstream | 1068532 | 1803497 ~ 1806790 (+) | True | si:ch211-229n2.7 |
| TU147818 | other | upstream | 1528737 | 1344336 ~ 1346585 (+) | True | G125062 |
| TU147636 | other | upstream | 1769035 | 1103735 ~ 1106287 (+) | False | lonrf1l |
| XR_004578620.1 | other | downstream | 1182885 | 4095269 ~ 4101689 (+) | False | si:ch73-233m11.2 |
| TU149628 | other | downstream | 1308300 | 4220684 ~ 4278077 (+) | False | ssuh2rs1 |
| XR_004578621.1 | other | downstream | 1830855 | 4743239 ~ 4762991 (+) | False | srpk3 |
| XR_004578572.1 | other | downstream | 3844379 | 6756763 ~ 6805310 (+) | False | phf19 |
| XR_004578571.1 | other | downstream | 3844379 | 6756763 ~ 6796076 (+) | False | phf19 |
