RNA id: TU148429


Basic Information

Item Value
RNA id TU148429
length 1379
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC113535041
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2845709 ~ 2918231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacgcacgcacgcacacacacacacacacacacacacacacacaagctGCAGAGTTACACGGAGTGTTTGAGGAACGGTTCACCGAAATTTAACATGTTTCACCTCAGCATAAATGTGATCGATAAACCGAGATATGATTAGTTTGCTTCTTTCGTTTTGCAGGGCTGATGTAGCTCACAAGTAATAGAAGTCTATGTGAATagaattttttccccataaaaaacaataaatcttcACGGATAAAGGTTTTCACAATAATAAGAATAATCAGCGTTTACAAATTTGGCTTCAGGCTTTCTGCTACCGCCTTTAAACAAGAAGTCAAAATGATAGAAAATCTCACTACGAGTTTCCGACATTCAGCTACACGGTgacattttgcttatttctgGATTATAGAGGCTCTAAATCACATCAGCAAATTATTAGTGAATAACTCGGATATTAGTACACATGCTAATTCATGGATCTAGTGCCAATTTGTACAAATTTATCGAAACAAATGTTATATATGGTCACCAGAATTCGCAGACAAGTACGctgtgtaaatttaattttgcGATGAACCGTTCCTTTACAGGTAAGCTTGACGAGAGGCAAAACTCAGGACTAAAAGGTTGATTCTCAAGTTGATGTTCCAGAAATGACAGACACAAAAACCCAACATACatcaaatacatatatacatacagtcgAATCAGTCCAAAGAGTTCATACGATCTTCTGATTTTCCACGTATAACCGTAACAGCTGTGTAAACTCTCCCGTTCATTAACCATCAGTCTGCAAATCACTTCAAATTAACGTCCATCACTCAACCCCATGGATTAATAAACACGGATTTGGAAGAAGGAAGACGTACAATAagacgagacgagacgagacaGGAGACGAGACAGTTTGGTCTTGAGTTTGGTTACAGGTGGAGGTTAAAGACGTACGTTTGCACAGGTGAGCATTTCTGCTCCTGAAAAAGCACCTGAGAATGACGCCTTCGTCTTCTGTCCTGTACACCAGGTGTGTCccaaagtgtctttttttttttttctttaaataattatgGCTCTGTTCTGTGACCCGTTCCTGGAGTCCAAGGTCAAAGTTCATCGTTCTCCATCTGTTTAAACGCCTCCAAGTCCTCCTGCCAATCGGCCATTAAAGAGTCCACCGATTGGTCGTTAGGATCCTCGTCTTCTGCAGGCTCCTCCTCCACGGTCAGAGGTACGTCGTTGCTACGCCCCTCCTCCTGCTTTCCTGTCTCCTCACCCGCTATATCTTGGCCCTGGgtggtggattgtgattggtcaggtgttgacGAGGGGGCGGGATGACCGTGGTCCTCCTCGCAGCAGCCCTCCTCCTCGCCTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148315 lncRNA upstream 103336 2705841 ~ 2745563 (+) True G125484
TU148365 lncRNA upstream 106615 2741998 ~ 2742284 (+) True G125525
TU148348 lncRNA upstream 127017 2719032 ~ 2721882 (+) True G125509
TU148346 lncRNA upstream 127017 2720315 ~ 2721882 (+) False G125509
TU148312 lncRNA upstream 139240 2707964 ~ 2709659 (+) True G125482
TU148482 lncRNA downstream 116704 2993850 ~ 3227664 (+) True G125626
TU148573 lncRNA downstream 459275 3336421 ~ 3338476 (+) False znf692
TU148612 lncRNA downstream 567869 3445015 ~ 3458860 (+) False acsbg2
TU148610 lncRNA downstream 578171 3455317 ~ 3477053 (+) False acsbg2
TU148607 lncRNA downstream 599175 3476321 ~ 3491140 (+) False acsbg2
XM_034306562.1 mRNA upstream 144836 2694963 ~ 2704063 (+) True ptgesl
XM_034306597.1 mRNA upstream 206293 2640711 ~ 2642606 (+) True LOC117597819
XM_026928242.2 mRNA upstream 429944 2409325 ~ 2418955 (+) True mpnd
XM_026927927.2 mRNA upstream 459954 2369339 ~ 2388945 (+) True fsd1
XM_034306596.1 mRNA upstream 482654 2360954 ~ 2366245 (+) True ccdc181
XM_026928129.2 mRNA downstream 20153 2897299 ~ 2906546 (+) True npl
XM_026928126.2 mRNA downstream 29579 2906725 ~ 2910360 (+) True LOC113535040
XM_034306258.1 mRNA downstream 34575 2911721 ~ 2918231 (+) False LOC113535041
XM_026928128.2 mRNA downstream 34575 2911721 ~ 2918231 (+) False LOC113535041
XM_026928127.2 mRNA downstream 34804 2911950 ~ 2918231 (+) True LOC113535041
XR_003403572.2 other upstream 616759 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 917481 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1042109 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 1502314 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 1742612 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 1218123 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 1343538 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1866093 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3879617 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3879617 6756763 ~ 6796076 (+) False phf19

Expression Profile