RNA id: XM_034306258.1


Basic Information

Item Value
RNA id XM_034306258.1
length 2258
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC113535041
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2845709 ~ 2918231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCCGAACATCAGCTCATGCCTAGTCccatctgttttctgtttagataagtaagaaagagagagcttgAGACAAGAAACAGattgaagaagagaaagaaggataagagagggagggaaagagagagagagagagaaaatgtgacagtgagaaagaaaaactgtATCTGTTAAAGGGTGGAATGTGTTTTGcacTACCACATTACCTCATAAATATCTTTGCCAGTCCTCCATGTGCAATTCACACAGGGTGCAACATTTGTCTTGGAAATTGTGACTGTTTATCAGTAAGGAGTTTTGACCCAGTATTTGACTATAGCACTTCTGGGGAATGCCAACAAGAGCAAataggtctcacacacacacacacacacacacacacacacacacacacacgttagtgTAGTTGAAATTGAATGACCCGATGGAGTGtgagcagtgagacagaaataattttaaactcATGAAAACACGCAGCACGATTAAACACTTGACCACGCTGACCAGATCTTGGCACTAAACCCCATACAAGCAGAAAATTCCAATTTTTACTCTTTCCAAAATAAGTGTGCCAAAATGCCGTTCAGGAAACAATCActtcctcaccagtctctcttttgtctctctcttaaagttaagaAGACAAAGAAGTTACTCATTACTGCGAAAACCACAAAACTTAAACTCCTGTTGATGTTCCTGTGGTAGAAAACTTGATGACttttacagagcactgacactggagactccttccataaacgttaaataaacgttcGCTCATAggaaacttcaccgtatcaataAAACCTTCCTGTACATAAAGAAGAAGAGTTTAGGAAAACACCAGTAGCTTGTATCAGGTTTAGAAAAACACCAGTAGCTTGACCTTAACACagaacatcacatcacacctaGTCCCATCTGTTCTCTGTTTGGAtaaacatgagagagagagagatagagagagagagagagagagggaagggggGCAATATATTTTAAGAGTTGCAGTGTGGTTTGGTCGGAGAGCGTTGTCATTCAGGTCTGTTAGTCATTTTTAGCTCGGTTAGACTCAGACGCAGTGTAAATTGCCCCGTAAGCTCTGTTTTGGTGACCGTGGCAGCACTATGGTTTCCAGCACTTTGTGGATCTTGGCTCGGATGCTGGCGTTTGTGTGCCTCCTGATGCCAGGCTCTGGGTTCCTGCTGCTGCGTGAAGGGGAAAAATGTGGAGGCTTCATCGAGGGCATGTGTGAGTCCGacttcctctgtctgtctgatgaACCCAAGGACGAGAACATCTATGTAGAAGGAGTGTGCACCAGGGTTCCAGCTTGTAACTGCTCCGAGTTCCAGTGTCCGCCACGGCGCCGCGGTGACCGTCGCAGCGGTGTAGCGACCGATCCGTGTGGGTGTTGCGTCCACTGCGCCAAGCAGAAGGGGCAGGTGTGCGGTGGCCCGAGTTGGAGATGGGGTTACTGCGATCAAGGATTGATTTGCTCCCTTGTAGTGGGAATGGATTCTGCCAGAGCTCCACAGATAGGCGTGTGCAAAGagGTACCAGATCACCTCATTGAAAATTTCACAGCTATCCTGTGTCCAATTCGTACAGGTTGCAACATTCATGTTGGAAATTGTGACTGTTATTCGGAACAGTCCTGTCATTCGTTGTTCCGTTACAGCACCTTTGAGCAATGCCGGCAAGATCAAATAGATGAAGAAATACACTACATCACCGGAGAGCTTCCCAAAAGAGACAGAcctgcatatgtgtgtatggagtgGGGTTGTGAGGTTCAGggctgccagtgtgtgtgtcaggagagAAAGTGCGACTACAGGACAACCCCACTTTCCGAGGCCGCCTGCTGCAACATGCTGAaggaaTCTGGGTGCCGTAATGCGTCCTGTCCTGAGATTCCCACTCCACCGTGTCCGGAAGACTCCTTCATTAGTGAGCCTCACACTGATCCCGGTCAGTGCTGCCCTGTTGTGCCTGCTATGTGCACCTGCAACTTCCAGACCTGCGCTCCAAAACCCACATACTGCCCCAACCGTGGACTTCCCAAACTTGTCGTAAAGGGCAACGGACACCCAGGGACCTGCTACGACCTTTACGAGTGTGTGAAAGAAGGAGATTAATTAGCATCTgcaatataacacacacatttatcttatTGTCCTTGTAAGGaataaccttaacctcagtaacccaaaggaaacattttggttCTTTTAGTTAGTCAGTTAGTTAttcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148431 lncRNA upstream 34575 2845709 ~ 2877146 (+) False LOC113535041
TU148429 lncRNA upstream 34575 2848899 ~ 2877146 (+) False LOC113535041
TU148442 lncRNA upstream 55946 2854757 ~ 2855775 (+) True G125593
TU148365 lncRNA upstream 169437 2741998 ~ 2742284 (+) True G125525
TU148348 lncRNA upstream 189839 2719032 ~ 2721882 (+) True G125509
TU148482 lncRNA downstream 75619 2993850 ~ 3227664 (+) True G125626
TU148573 lncRNA downstream 418190 3336421 ~ 3338476 (+) False znf692
TU148612 lncRNA downstream 526784 3445015 ~ 3458860 (+) False acsbg2
TU148610 lncRNA downstream 537086 3455317 ~ 3477053 (+) False acsbg2
TU148607 lncRNA downstream 558090 3476321 ~ 3491140 (+) False acsbg2
XM_026928126.2 mRNA upstream 1361 2906725 ~ 2910360 (+) True LOC113535040
XM_026928129.2 mRNA upstream 5175 2897299 ~ 2906546 (+) True npl
XM_034306562.1 mRNA upstream 207658 2694963 ~ 2704063 (+) True ptgesl
XM_034306597.1 mRNA upstream 269115 2640711 ~ 2642606 (+) True LOC117597819
XM_026928242.2 mRNA upstream 492766 2409325 ~ 2418955 (+) True mpnd
XM_026928605.2 mRNA downstream 2635 2920866 ~ 2926332 (+) True sec22bb
XM_026928606.2 mRNA downstream 2636 2920867 ~ 2926332 (+) False sec22bb
XM_034306697.1 mRNA downstream 33190 2951421 ~ 3031725 (+) True notch2
XM_026928255.2 mRNA downstream 117998 3036229 ~ 3055064 (+) True slc35a3a
XM_026928256.2 mRNA downstream 121717 3039948 ~ 3055064 (+) False slc35a3a
XR_003403572.2 other upstream 679581 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 980303 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1104931 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 1565136 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 1805434 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 1177038 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 1302453 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1825008 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3838532 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3838532 6756763 ~ 6796076 (+) False phf19

Expression Profile