Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU148442 |
| length | 209 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G125593 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 2854757 ~ 2855775 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU148315 | lncRNA | upstream | 109194 | 2705841 ~ 2745563 (+) | True | G125484 |
| TU148365 | lncRNA | upstream | 112473 | 2741998 ~ 2742284 (+) | True | G125525 |
| TU148348 | lncRNA | upstream | 132875 | 2719032 ~ 2721882 (+) | True | G125509 |
| TU148346 | lncRNA | upstream | 132875 | 2720315 ~ 2721882 (+) | False | G125509 |
| TU148312 | lncRNA | upstream | 145098 | 2707964 ~ 2709659 (+) | True | G125482 |
| TU148427 | lncRNA | downstream | 19547 | 2875322 ~ 2912384 (+) | False | LOC113535041 |
| TU148482 | lncRNA | downstream | 138075 | 2993850 ~ 3227664 (+) | True | G125626 |
| TU148573 | lncRNA | downstream | 480646 | 3336421 ~ 3338476 (+) | False | znf692 |
| TU148612 | lncRNA | downstream | 589240 | 3445015 ~ 3458860 (+) | False | acsbg2 |
| TU148610 | lncRNA | downstream | 599542 | 3455317 ~ 3477053 (+) | False | acsbg2 |
| XM_034306562.1 | mRNA | upstream | 150694 | 2694963 ~ 2704063 (+) | True | ptgesl |
| XM_034306597.1 | mRNA | upstream | 212151 | 2640711 ~ 2642606 (+) | True | LOC117597819 |
| XM_026928242.2 | mRNA | upstream | 435802 | 2409325 ~ 2418955 (+) | True | mpnd |
| XM_026927927.2 | mRNA | upstream | 465812 | 2369339 ~ 2388945 (+) | True | fsd1 |
| XM_034306596.1 | mRNA | upstream | 488512 | 2360954 ~ 2366245 (+) | True | ccdc181 |
| XM_026928129.2 | mRNA | downstream | 41524 | 2897299 ~ 2906546 (+) | True | npl |
| XM_026928126.2 | mRNA | downstream | 50950 | 2906725 ~ 2910360 (+) | True | LOC113535040 |
| XM_034306258.1 | mRNA | downstream | 55946 | 2911721 ~ 2918231 (+) | False | LOC113535041 |
| XM_026928128.2 | mRNA | downstream | 55946 | 2911721 ~ 2918231 (+) | False | LOC113535041 |
| XM_026928127.2 | mRNA | downstream | 56175 | 2911950 ~ 2918231 (+) | True | LOC113535041 |
| XR_003403572.2 | other | upstream | 622617 | 2216102 ~ 2232140 (+) | False | alkal1 |
| TU147950 | other | upstream | 923339 | 1877041 ~ 1931418 (+) | False | LOC113535242 |
| TU147915 | other | upstream | 1047967 | 1803497 ~ 1806790 (+) | True | si:ch211-229n2.7 |
| TU147818 | other | upstream | 1508172 | 1344336 ~ 1346585 (+) | True | G125062 |
| TU147636 | other | upstream | 1748470 | 1103735 ~ 1106287 (+) | False | lonrf1l |
| XR_004578620.1 | other | downstream | 1239494 | 4095269 ~ 4101689 (+) | False | si:ch73-233m11.2 |
| TU149628 | other | downstream | 1364909 | 4220684 ~ 4278077 (+) | False | ssuh2rs1 |
| XR_004578621.1 | other | downstream | 1887464 | 4743239 ~ 4762991 (+) | False | srpk3 |
| XR_004578572.1 | other | downstream | 3900988 | 6756763 ~ 6805310 (+) | False | phf19 |
| XR_004578571.1 | other | downstream | 3900988 | 6756763 ~ 6796076 (+) | False | phf19 |
