RNA id: XM_026927947.2


Basic Information

Item Value
RNA id XM_026927947.2
length 1908
RNA type mRNA
GC content 0.49
exon number 12
gene id znf692
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3336380 ~ 3347747 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TgttaacacacacttcctgtttttttttttttttttttatctgggcTTGCCATGGTTATTTTGGCTTCCATGACGGGCATTAAAACAAATCATGAATTAAactgtatgcttttttttcatgctgGATTAATTGACACTACTGTGGACGTTTTTTCGTCTTTATTGTGGTTTTATTATTCGCTGAAAGTCGGCTTGCTTGCTTAAAAGGGCAACGGAGAAGAGCAGTGCGTTTATTTGTTCTCTCCATCATCTCCATGGCGTCGAATAAAGAGGCTCAGCGCAGGCAGCGGCGTAGAGAGCTGGACGCTAGAAGGAGTAAGTTTCGTGTGCGACTCGGCTCATGGCCGGAGAGCTGGAGTAAACTGAAGGACCAGCTGGGTTTCTCTCTCCACTCAGAGCTTGCACAGTTCCTGCTGGACAGttACTCCTGCAAAGTGTGCAGCAGGTGTTCAGGTGATGGGAAGGAAGTAATCTCAGTAACTGTGGCTTCTCTGGATCAGCTGATCCTGCTGGTCCACAGTCACGGACAGCAGTGCCCTTTGACCCCAAACCTGCAGTCTgacccacacagacaggaagtgaaggaGAGAACGCTGGAGGAAGATCCTGAAACTTCCACGAGGTCATCTGAAGCAGCTGAAGCAGAACTGTGCCTTACGTACGTCTGTGAAGGTGGACACACGTTCACCTGGCGTCCGATACACACCCAGAGGGATGATAATGGAGAGAAGAGTGAGCAAGGAAGCGCTGCTccttcaggccagaggaaaatCAGAGAACGACGGAGGAAAGGAGTGAAGCGAGAGGAGGAGGTATGCAGGatgaggagcaggaggagcacAAGAGGAAGATCTGTCTCTGATGGAAACACTGCTGGATTCAGACGGAGCGATGAGACAGAGCAAGTCACCCCATCCTCCTCAGGAGAGAATGAGGAAGCAGAATATTTGTGTCACAGCGATGCAGTGCAGCATGAACAGGATGCAGGTTCACAGGAAGGAAGTGATGCGGCTCTTCTCATCTTGCCCCCAAAGATCAGCGCTGAGGCCGAGGCTGATGACTGTCAGAATATCAGAGATATTGAAATTCAGGACTCTGTCGAAAGGGTCGCAGGTTCACACATGCAGTATGACAGAGAGCTTCCTGACTCCAGCAGGGATGTTGTATGGGATGCAATACCAAACTCAACCACGAGGGAGCGTGAGAGGAGAGAAGATGTTCCTGAGACGAGCAAAACCGAGGAGCCGAGGATGAGAGCGAGGAGAAAAACCAACAGACAACCGTCACAGAAAGACGAGCTTTTGAAGATAAGCGGCAGAAGGAAAAGAAAACCAGCTCCGAAGCTCATTTTACCCTGCGAGTTTGACGGCTGCTGGAAAATATTTTCAAGTCGTCAGTACCTCAACCACCACATGAAGTACCAGCACTTCCAGCAGAAGACCTTCTCTTGCTCCAATGCCTCCTGTGGAAAATCATTCAACTTTAAGAAGCACCTTAAAGAGCACGAGAAGCTGCACAGCGatcAGAGAGACTACATCTGTGAGTTCTGTGCTCGTGCCTTCCGCACCAGCAGCAACCTGAGCATCCACCGCAGAATCCATACTGGAGAGAAACCACTGCAGTGCGAGGTGTGTGGCTTCACTTGTCGTCAGAAGGCCTCTCTGAACTGGCACATGCGTAAACACGATGCCGAGCGCAGCTACCAGTTTGCGTGCGAGATCTGCGGCCGCCGCTTTGAGAAGAGGGACAACGTGACTGCTCATCAGAGTAAAAGTCACCCAGATCACGTGACCTCTGACCTTCCTAAAGAGCCTACAGCCAACGACCTTTGACCTACTTGAGGCTGGAGTTATAATTAAGCTTGTGCCAATAATAAACATTCACGTCATGATTATTACCTAACTCTTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148482 lncRNA upstream 108716 2993850 ~ 3227664 (+) True G125626
TU148427 lncRNA upstream 423996 2875322 ~ 2912384 (+) False LOC113535041
TU148431 lncRNA upstream 459234 2845709 ~ 2877146 (+) False LOC113535041
TU148612 lncRNA downstream 97268 3445015 ~ 3458860 (+) False acsbg2
TU148610 lncRNA downstream 107570 3455317 ~ 3477053 (+) False acsbg2
TU148607 lncRNA downstream 128574 3476321 ~ 3491140 (+) False acsbg2
TU148609 lncRNA downstream 128574 3476321 ~ 3537289 (+) False acsbg2
TU149403 lncRNA downstream 221242 3568989 ~ 3575303 (+) True G126401
XM_026927866.2 mRNA upstream 238156 3089581 ~ 3098224 (+) True foxd2
XM_034306266.1 mRNA upstream 238156 3089581 ~ 3098224 (+) False foxd2
XM_026928409.2 mRNA upstream 249199 3077120 ~ 3087181 (+) True foxe3
XM_026928255.2 mRNA upstream 281316 3036229 ~ 3055064 (+) True slc35a3a
XM_034306435.1 mRNA downstream 2065 3349812 ~ 3399427 (+) False fcho1
XM_034306436.1 mRNA downstream 12380 3360127 ~ 3399427 (+) True fcho1
XM_034306437.1 mRNA downstream 18382 3366129 ~ 3399427 (+) False fcho1
XM_034306598.1 mRNA downstream 104811 3452558 ~ 3477074 (+) True acsbg2
XM_026928034.2 mRNA downstream 286953 3634700 ~ 3658044 (+) True LOC113534995
XR_003403572.2 other upstream 1104240 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 1404962 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1529590 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 1989795 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 2230093 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 747522 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 872937 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1395492 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3409016 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3409016 6756763 ~ 6796076 (+) False phf19

Expression Profile