RNA id: TU148607


Basic Information

Item Value
RNA id TU148607
length 345
lncRNA type sense_over
GC content 0.43
exon number 2
gene id acsbg2
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3445015 ~ 3537289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgttaaaggttaaaggttctatgtacaACAGTTTTCCTGTCAAAACGGGACACTTTTACGCTAAGAACCCAGACAATCTAAAATTGATCATCTTTGTTTAAATCTTCAtgatgattttttcccccctgatttcttcctgtttgaagaTGTTGATGAGGttctaataaatgtaaaagtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagctgctgACTGCCACACTGAATTTCTCACCTTGGCCTTGTTTCTGTTGCGGCTCAAAGTCTGAGTCAGAGCTGGACTCCGAACTGGAGCTGGAGTTCGACGGACTGGAGGGAGCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148612 lncRNA upstream 17461 3445015 ~ 3458860 (+) False acsbg2
TU148573 lncRNA upstream 137845 3336421 ~ 3338476 (+) False znf692
TU148482 lncRNA upstream 248657 2993850 ~ 3227664 (+) True G125626
TU148427 lncRNA upstream 563937 2875322 ~ 2912384 (+) False LOC113535041
TU148429 lncRNA upstream 599175 2848899 ~ 2877146 (+) False LOC113535041
TU149403 lncRNA downstream 77849 3568989 ~ 3575303 (+) True G126401
TU149410 lncRNA downstream 138662 3629802 ~ 3631632 (+) True G126408
TU149418 lncRNA downstream 193753 3684893 ~ 3701699 (+) False mknk2b
XR_004578595.1 lncRNA downstream 228202 3719342 ~ 3735098 (+) False LOC117597831
XR_004578594.1 lncRNA downstream 229054 3720194 ~ 3735098 (+) True LOC117597831
XM_034306435.1 mRNA upstream 76894 3349812 ~ 3399427 (+) False fcho1
XM_034306436.1 mRNA upstream 76894 3360127 ~ 3399427 (+) True fcho1
XM_034306437.1 mRNA upstream 76894 3366129 ~ 3399427 (+) False fcho1
XM_026927948.2 mRNA upstream 128574 3336381 ~ 3347747 (+) False znf692
XM_026928034.2 mRNA downstream 143560 3634700 ~ 3658044 (+) True LOC113534995
XM_026928033.2 mRNA downstream 143560 3634700 ~ 3658044 (+) False LOC113534995
XM_034306860.1 mRNA downstream 168710 3659850 ~ 3667299 (+) True mob3a
XM_034306859.1 mRNA downstream 168718 3659858 ~ 3671689 (+) False mob3a
XM_026928036.2 mRNA downstream 168718 3659858 ~ 3671689 (+) False mob3a
XR_003403572.2 other upstream 1244181 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 1544903 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1669531 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 2129736 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 2370034 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 604129 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 729544 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1252099 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3265623 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3265623 6756763 ~ 6796076 (+) False phf19

Expression Profile