RNA id: XM_034306598.1


Basic Information

Item Value
RNA id XM_034306598.1
length 5199
RNA type mRNA
GC content 0.48
exon number 16
gene id acsbg2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3445015 ~ 3537289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGAATGATGTGTTAGGGCGGTTTGTGAGGCAGGCGGAAGAGAAGATACCGGCATTCTGCTGATCGAAGGAacgaagaaaagaagaagaaatcagatttaaaaaagaaaaaaaaagaacatagaAAAGAAATTTAGAAAAATCTCAACAGATCAAGCAGCCAAGGCTTGGACGATGCAGTTGACCGTGTGTGAACCCTCAGCCATATCGACAGCAGGAGTGATGGACCCCGCAGGAGACGTGAGCGTGCTGCAGTCCTGCGCTACTGAAGACAGCATCGCTTCTCTGGAGGACCATACTGCAGAGTCTACAGCCAATGAATCATCAGAGGAGGAGTCTCCCTGTGAGCGGGAAGAGAGCAGTggcatcaacacacacacagagcctgCTCCCGTAGCCCCGTGGTTCGCGCGTGTTCGCGCCCCGGGCTCAAGTCTGTGGACATGGCAGCGGGACGGCGAGGTGAAGCTGAGGATGGGCGAGTCGGGGCCGGCGGCTGAACCTCCTCTCACCGTGAACCAGCTGTTCACACGCACCGTGGAGCGATTCGGCGACCGGATGGCACTCGGCTGGAAAGAAGGAGAGCAGTGGAAGAAGATCAGCTACAGAGATTATTACAGAGACTGCCGCGTCGCCGCCAAGAGCTTCCTCAAGcTCGGCCTGCAGCGCTACCATGGAGTCGGCATCCTGGGCTTCAACTCTCCTGAGTGGTTCATCTCTGACGTTGGAGCCATCTTGGcaggAGGTTTCGCTGTGGGCATCTACACCACCAACTCCCCGGACGCGTGTCAGTACGTCGCTGAGAACTGCCAGGCCAACATCCTCGTGGTGGAGAACCACAAACAGCTGCAGAAGATCCTGCAGATCCAAGACAAGCTGCCTCACCTGAAAGCTATTATCCAGTACAAAGATGCTCTGAAAGAGAAGAAACCAAATCTTTACTCGTGGGAGGAGTTTATGGAACTGGGCCGTAACGAGCCGGACGCGCCACTTGATGACATCATCGCGACCCAGAAACCCAATCAGTGCTGCACACTGATCTACACATCAGGAACAACCGGGCAGCCAAAGGGGGTCATGCTGAGCCATGATAATTTGACGTGGACGGCGTTTGCGACGGCTCATACGATCCACCTGTCAGAAGAGACTCAGGAAGTGGTGGTGAGCTACCTGCCCCTCAGCCACATCGCCGCCCAGATGGTCGACATCTGGATCACTATGAGGGTCGGAGGAGCCACGTACTTCGCCCAGCCTGACGCcctcaagGGCTCGTTGGTGAACACCCTGCGTGAAGCGCGTCCCACGGCGTTCCTGGGAGTCCCCCGGGTCTGGGAGAAGATGCAGGAGAAGATGAAGGCAGTCGGAGCCAAATCGTCCACCGTGCGCCGGAAAGTGGCTTCCTGGGCCAAGGAAGTGGGTCTGCAAACCAACCTGAGCAAGATGGAGcaGAACGGCGCGATGACCCGCACGCCGCTGAACTATCGCCTGGCCAAGCGTTTAGTGTTCAGGAAAGTGAGGAAGGCGCTGGGGTTAGACCGCTGCGTGCGCTGCTACACAGGCGCCGCGCCCATCACCAAGGACACGCTGGAGTTCTTCTTCAGCCTGGACATCCCACTGTACGAGCTGTACGGCATGAGCGAGAGCACCGGACCACACAGCATGTCCCTGCCTGAGGCCCTCAGACtcaccagCTGCGGGAAGGTGATTGCAGGTTGCCAGACGAAGATCTTTAACCCCGACTCGGATGAAAACGGCGAGATCTGCTTCTGGGGCCGTCACGTCTTCATGGGCTACCTGAACATGGCCGACAAGACCGAGGAGGCGCTGGACGCAGACGGCTGGCTGCACTCCGGAGACCTGGGCAAACACGACAAGGACAACTTTCTCTACATTACAGGACGCATCAAAgagctgATCATCACTGCCGGAGGAGAGAACATTCCCCCGGTGCCCATCGAGGACGCGGTGAAGGAGGCCGTGCCCATCATCAGCAACGCCATGCTGATCGGAGACAAGCGCAAGTTCCTCTCCATGCTGCTCACCATCAAGtgccaGTTAAACGGTGACACAGGTGCCCCAGAGGATGAACTCACCCCCGAGGCTGTGGACTGGTGCAGGAAGTTGGGCAGCTCGTCCACGCGGGTGTCGGAGATCTGCGGGGGACGCGACCGCCTCGTCCACGCCGCCATCCAGGACGGCATTAACAGAGTGAACGAGAACGCCACGTCCAACGCCCAGCGTATCCAGAAGTTTATCGTGCTCGATCAGGACTTCTCCATCCCTGGAGGAGAGCtcggtCCCACTATGAAGCTGAAGAGGCCGGTGGTGCTGAAGATGTACAAAGAGCAAATTGAGAACTTCTACAAAGAGGCCGTGACTCCGAGCAACCCTGAGAACCCGCTGCCTCCTAAATAAACTCCATACCAAAGggcaaagacacacacacacacacacacacacacatacccgcgccttctgtctgtgtctgtgtcgcTTCTCATgtaaatgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggagtgtaaCTTTCCCCATCTGATGTTTTCCAGCTGATTCTCTCCTCcctttgtgatttgtttttttccattatgctttttttttttttttttaaacatgtgcaAGCGAGATGCTAAAGAAACACGAGCGACCTCCTGACGAGCCGCTGCCGAGCAGCTTCATGAAGTTCTTATCAAGCGTAGTGtcggttatttatttatttccgaGGTGTGATGAAGTTTGTAGGAGAGCCGTAGACTTAGTGCCGATTCATCGGGAACGTTCGGGAATCCGAGCTGCTCATGTTTACACGATGGATCTATTtataaattgcttatttatggTTTCTGTTTATGCCAAAGCAGGaaaatagaaggaaaaaaaagaacgtGTGTAGCTGTAGCCGTGTGTAACTGGAGTGTTTTTCAGTCTCGTCCTGCTCTCATTGCTCCGGAGTGTGGAATAATCAAACCTTCTAGATTAGCACCAGTTCTGTACACacgtctgtctctgtctctctagatggatggatggatacttTGATGGACAGAGTCACCATCTTTCTCTGAGAACATTCCACAGGGTTCTTGCTGACATCTGGAAAAACTGGGAATGTGTTAAATGTAAAGAGACTCAATTCCAGATGTACAGAATTTCAGGAGAAAACATACCTGAGACGCTGAGGTTCTCCAGACATTTCCTCCTTCGATCTGGCACCCTAAAGGGTTTATCAGTTTGCACTGGGGGAAACCTGTGACATTTCTATAGAATCCTACACCACAGAACTTCCAAAAGGTTCCAAGTGCCCCATTTGGGATGCTAGAACCGTGACCAATCCAAAGAACCCTGGAGGAACCTTTGGTGTAGGATTCTCTAGAAGTTGTATGGATTCTACTTGGAAAATATCTGAAAGCGAAAACCTTTGGAAACTTTCagaaaggttccaagtagaacctcaTTACAAAGCTGGAACCATTGAATATATAAAGAACCCTCTAGGAACCTGTCTGAAAGGGGGGGGGGGTGTAGGGTTTTATAGAAATTGTATGGGATCTATTTGGAAAATTCCTCTTTGGGAAGCTAGAACTGTTACcaatccaaagaacccttgaggaacctttgGTGTAGGATTCTACAGAAGTTGTATGGATTCAACTGGGAAAATTTACGAAAGGGAAAACTGTTGGAAACTTTCAGATGTTAAAAGTAGAATCCAATTAGGAAGCTAGAACCATTAGCCATACAAATAAACCTCAAAGACCCTTTCTGAAATGGAAACGTTAGGTGTAGTGCTTTATGGAAGTTGTATGGGTTCTACCTGGAAACTTTCTGAAAAGGAAAACCTTTGGAAATTTTCAGAAAGGTCCCAAGTAGAAACCTAGTTACCCTTGAAAAATCATTCTGAAAGGGAAAAACCTTTGCTGTAGTGTTCTATAAAAATTGGAttggttctacttggaaactTTTAGGAATGTTTCAAGTAGAACCGAACTACAAATCTGGAACCACCGACTATAAAAACCCTCAAGGAAATTTTCAGAAAGGGAAAATCTTTGGAAACTTTCAGAAAGGTTCCAAGTAGGACCCAGTTAGGAAGCTGGAACCATTAGCAATCCAAAGAACCATTGAGGAACCTTTCTGAGAGGGAAAACCTGTCGTGTAGGGTTCTATAGGAGTTCCATGGGTCCTACTTGGAATCTTTCTGAAAGAAAAGCCTTTGGAAAATTTCCAGAAatgttccaagtagaacccctgtagaaagacagaaacattaactatccaaagaacccttgaggaactctTTTTTAAAGCGCAGTCTCTTAAAGCTTGTcatgaaatgaaaagtaaaaaaaaatataaaatgtgattttttttttttttttattctagaaAAATTGAATGTTTTCTCTGAATTAAAGAGACgtgttaaaggttaaaggttctatgtacaACAGTTTTCCTGTCAAAACGGGACACTTTTACGCTAAGAACCCAGACAATCTAAAATTGATCATCTTTGTTTAAATCTTCAtgatgattttttcccccctgatttcttcctgtttgaagaTGTTGATGAGGttctaataaatgtaaaatgtgtgtgtgtgtgtgtgtgtgtgtggcattgaGAGCAGCGTAGAGAATGAAAATCAGTCTGGTTCTCTGACTCTCTGAATTCATGCCAGTGAAAACAGCAGGGATTTTCAGGTCAGATGATGTTTTTGCACTATTTATTGCCTCTCTCgtgtgctgctctggtttcacGGATCTTTCACCAGCAGCAGATTTAAAGCCAAGAAATCACACCATTTAAGCCATGAatattttgttgctttttttttcctttcagccATGCTCCAATGTTCAAATGTTCATATGCAGGGTCTGATTTGTggtgttgttattattactattataatatTGCCTAACAAATTGTCGTGAACttgttaaatattgtaaataccTTCATGCTTGATTTGTCTCGTGCGTGTGTTTATCACATGAGCAACTGAACAGCTGCTCTCACTTCATTTTAATATCGACTTCAAGAAATGAAACTCGGACATGACGCAAATATGAAGAATCTGCTTTTGATAATTTGGCATGTGATATACAGCAGTGTGGaggaaataaatctgtacagtTCTAAGAGATTAAAATCCGACATACTGAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15013 ACSBG; long-chain-fatty-acid--CoA ligase ACSBG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148573 lncRNA upstream 114082 3336421 ~ 3338476 (+) False znf692
TU148482 lncRNA upstream 224894 2993850 ~ 3227664 (+) True G125626
TU148427 lncRNA upstream 540174 2875322 ~ 2912384 (+) False LOC113535041
TU148429 lncRNA upstream 575412 2848899 ~ 2877146 (+) False LOC113535041
TU149403 lncRNA downstream 91915 3568989 ~ 3575303 (+) True G126401
TU149410 lncRNA downstream 152728 3629802 ~ 3631632 (+) True G126408
TU149418 lncRNA downstream 207819 3684893 ~ 3701699 (+) False mknk2b
XR_004578595.1 lncRNA downstream 242268 3719342 ~ 3735098 (+) False LOC117597831
XR_004578594.1 lncRNA downstream 243120 3720194 ~ 3735098 (+) True LOC117597831
XM_034306435.1 mRNA upstream 53131 3349812 ~ 3399427 (+) False fcho1
XM_034306436.1 mRNA upstream 53131 3360127 ~ 3399427 (+) True fcho1
XM_034306437.1 mRNA upstream 53131 3366129 ~ 3399427 (+) False fcho1
XM_026927946.2 mRNA upstream 104811 3336380 ~ 3347747 (+) True znf692
XM_026927947.2 mRNA upstream 104811 3336380 ~ 3347747 (+) False znf692
XM_026928034.2 mRNA downstream 157626 3634700 ~ 3658044 (+) True LOC113534995
XM_026928033.2 mRNA downstream 157626 3634700 ~ 3658044 (+) False LOC113534995
XM_034306860.1 mRNA downstream 182776 3659850 ~ 3667299 (+) True mob3a
XM_034306859.1 mRNA downstream 182784 3659858 ~ 3671689 (+) False mob3a
XM_026928036.2 mRNA downstream 182784 3659858 ~ 3671689 (+) False mob3a
XR_003403572.2 other upstream 1220418 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 1521140 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1645768 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 2105973 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 2346271 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 618195 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 743610 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1266165 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3279689 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3279689 6756763 ~ 6796076 (+) False phf19

Expression Profile