RNA id: TU150355


Basic Information

Item Value
RNA id TU150355
length 4277
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G127210
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 5197926 ~ 5202226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCGCATGCAGGAAGCCATCTGTAAATAATATTCGCATTTTTAAGGAACTAGCTAATAGCTTTTTGTGACATGCAGTGTATGCAGGAACATGATCGTGTCCTCAGTGAGAGGGACTCGCTGAGCGATACAAGCAGTCCATGAATTTTACATGATGTCACCTGTGTCGTCTGAGTGACCTTTCCCATGGAGGGTGCACTCCTTGTGTGTCGTTAAGCTTTGTCTATAATTAAAGTGGCAACTGCCGTTCAGGTAATATATGACACAAATAGCatcagcacaaaaaaaagaagaaaaaacccaaaaaactgATGAGCCCGTGCTCAGCTTAGGCTTTTCTAGAGCGTCGAGTCCAGATCAACCGTGTCCGGTCCGATAATCACAAGGACTGAGAACAAGCTGTGAAACAGGTGCGAAAACGCAGTCTGACTCCATTCTCAGCAGGCACTGTGGTGACGAGAGGAGGCTATAAATACCCACTGTGGCTCCATCCCCACTCCTATAGCACATGCAAACTGGCACTCAATCAACACGTTCAGTCCAGGGAGTCCTGGTGGGATTTGTAATTACTCGTCCCTTGGCAAAATATGTGATCTATTGGCTTGGATACATGCTGCAGATCGCAACAGCTGGTCCTCTCTGGACGGTCTAGAGGCTAAAGAATGAATCGAAAAAATCTCTCGTGGGATTATCATTCAAGCGGATTATTCAAAGACAGTTTAGCAGGAACTGCTTTTAGTTAATTAATTCCAGCACAGTTTCAACCACACACTATAAACTAAACAGTGATTTCATCATTGTAGTGTGATTTAGCCCTTGTAACTCTTAAAACTACTCTTTCAAATTCATGTTTTCATCAGTGAATCtaaaaacacatacatttacccaaaaacatgcactacatgtgagaACTGTGTCTACAACATCCCTTGTGAATCTTGTGATCATCCACATGGGACTTTTCTGTAAGATCAATAATACTGCTGTCGATGCAATCTAAATATTGCTGGAAGACAAAATGTAAGCACAATTTCAATGCGATTTAATGTGCATGCCCTACTACGCTCATCCACAAGCGGTGGAGTTTGCAGCCTCAGATCAGTGTCTTTAGTCTTTATATTGAGATAAGTCAACATGTTGCTGGCACAAGATCCCAAGAGTCATGTGGTTTAGTGCACATGAAAGGTGTGTCAACTGAAAGAAGCGTGCCTTTGTGCACGTATCACATACAAATATAACTATAGCATATGGGGCAAAGATCACTGGAAAGTGCATTCCTGAGAAAGGTGTGTCCCTGATCTGCTCAGTAAGGAAATTTATAGCCCTTAATAACATGTAGATAAATAAAGACAGTAACTCCTGGGTAACTGAACCAAAATAATAGCAACAGTTAAAATGAACACTTGGTCACAGGTACGCTCTCAGTATATTGTGTGAAATCATTTTGAAGGAATGAAGTAAAGGAATAAAGGAAGTAAAAATCAGCacgtaaataaatgtaaagctaCTGTTAGTTATCAAGCAGGCTACAAAAGTTAATAACAGATGCCTGATAGTTTCATAGCAAATCAGAAAACTACATTATATGTACACTattctggcaaaaaaaaccaATGATCTCATTATGGAAACAAATAATATACCAGCAACCAATATGCCAAGCACTAGTTAACACTAAGTAAAGCAGGTTCTGTGTAAAAATAGTTCGATAGGCTCTATATAATTCCAGGATACTCACTTATTTAGGTTTTTAAAGCTTGTTAAGGCACATTTATAGGGAAATTCTGGCATACAactaaaatttaatatattatttgtcaTGGTTCGTAGTATTCTGTTGCACGGGACTGTCTTGCTTACTGTCCATAttttagcagaattcatgattttatgttgttttcctgttttcaccTGAACTCTACAATACCCAGAATGCAATACACTAATACGTAATTCAAGCATAGGGAATCCCTCCTGCGATCGATCGATCATGACCTCTGAGTGAGACACGTGACTCTGACGTCTCCCTGTGACGCGCCATTCCAGGAAGAAAAACACCgaaaaaaacccagagcAGAACTTTagtgattttaaaatgcaaacgagaatttgttttctaaaacgTCACTTTGTGCGTATTATCAAACTGGAGAAGCAAACACAAGATGGTTGTTTTTTCACAAGATAAGGATAGGGATATCCTTTTGTAAGGATAATTCTGCTCTGAGTTGTTCTGTCTTTCCAGCCAATATTTTTTCTCAGATAGCTAAATTCAGTGTGGTAACTAATAATTTAACTGggttagcttgctagttaactaacatgcctaatttatatttctttaacaaACCTATTAGCTCTACACCAATCACGTTCTAACTGAAGAGTTGCCCGTAATGGGCATTTAGCGATCTGACTTTGTTCAGCTTAGCATCTCTTTGAGCAGCACCTCGGCTTTCAGTGGAACAACGTCCTGAATGTTGTATTTGTAAAACGAATTAGTTTGTATAAACATCCAAGATATGTCATCAGGAGCAGGTTTCCCCAGTATTCAAACCAGGATCTCTCACTACAGTGCCTGAAGTGTCATCGCTGAACGTGCGACTATGTTTACAACAGCTGTATCAATGgttgaattttacattttggatGCAGTGTCCCTTTAGGCCAAATAAACATACCAGATATGTATTGTGTAATtactttaaacaaaatgtaacacAAAATTTGCTGTCCTGAAGCCCTCAAAAAATTCAAGCTTATATTATAGTtcaaatattattcagtaatggctataaatgattcagtaactacagtgacaCTAATAGTACAGAGATTTCTATTAATCCATGAGGAATTAAGTCTGGACCCGCTGTTGAGTCGTGGAAGTTTTCAGGGTTTAACTGGACCCACATGCTAAAAATGAAAAcgtttttaacagttttttaagGTTTGAGAGTGTAGTATACAGATAAATGGTTACAAAAATTGAGTCCCTTCCCTTCCTGATGCCTAAATCATCCTGAGTCAAGCTCCAGTCAGAAAAGGGATTAAAAGATTAACAGATGCTATTCTAACTGATGGCATTTGGGGTAATGTGCCTGAGTTAACCTCACTGTGGCTCACAGTGTCCTACACATAGCTAGGCCATAGCACAGGACACAGCAATGTTTTCTCTAAAATCATCTCTGTGTAACTAGTGTACGTTATCTTTAAATGCAGCAGGTccatattttggatttttttggcAACCCATATTTTTTGTAGTGCTGGATCAAATTGAAAACAAGTTTGACAAGGTAGTGTGTATTTCAGGTACTCTGGACATATTactcatttacagcatttggcagacgcccttatccaggcTGACTTACATTCCTCTCATTTATACAATGGAACAGTTGAGggtaagggccttgctcaaggcaAATCTCAGCAgtggcagtttggtggtgctgggattcgaacccacgaCCATCTGATCAGCACTGCAACTCACTGGGCTGTAACAATAAGCAGGATTTGGAAACATAAATCtggataaaattattatatattaccaGTCAGTATTTAATATGTCTAAGATAGTTTCCATTTGCACTGAAGTCAACTAAATCAACTAAATTTTCAAGCAGAATTaagctatattattattaactatatATAGGCTagtactgtaaataatttttttaataactctCTTTTGACCATGTTAATAGGTGACACAAGTGTTGATCTCTCAGCTTGATGTGAGTAAACTTTTCCCTAAATAACATGTCGCTTCGTATCTTATCACTGATGATGAGGAAAAAAGCGGTATCTACAAACAATATCGCAAATTAGTAGTCTTACATAAGAGTTTTTATTGTCTGCAAACGACAAATCATGATGAAGTTTAACTGTTGACTTAACGCCTATTACTGACAATTACAGATAAACTGTTTATGCTAATATCACACAGCATGATACTGGCCATTACATAAGTAAGGAAtcaaatagtaataaaataagatagtaataaaatactacagcagctataaaacaCTGTTCCCTCACTTTTCCCTTCAAGTTAATGAGACATACATAATGCAGCTGGTTATGGAGGGAGCATAAAGCCGAAATGCCTCAATTGTTAACAGAAAACGTAAACTTACGTCTTTACTGCGGactgttacagagtgctgacactggagactccttccaaaaatgctatataaacatctcctcacagaaaatttcacatCAACGATACAGTATATTTcctaatatgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150340 lncRNA upstream 142092 5055633 ~ 5055834 (+) True G127198
XR_004578588.1 lncRNA upstream 144099 5051231 ~ 5053827 (+) True LOC117597829
TU150287 lncRNA upstream 258540 4885020 ~ 4939386 (+) True G127155
TU150279 lncRNA upstream 355792 4841426 ~ 4842134 (+) True G127147
TU150236 lncRNA upstream 402670 4772794 ~ 4795256 (+) True G127105
TU150450 lncRNA downstream 375551 5577777 ~ 5594115 (+) True G127293
TU150944 lncRNA downstream 705019 5907245 ~ 5907946 (+) False tbc1d22b
TU151322 lncRNA downstream 1422461 6624687 ~ 6625322 (+) True G128072
XR_004578522.1 lncRNA downstream 1457638 6659864 ~ 6687416 (+) True LOC117597772
TU151394 lncRNA downstream 1589405 6791631 ~ 6792928 (+) False phf19
XM_034306454.1 mRNA upstream 38830 5132434 ~ 5159096 (+) False bcap31
XM_026928516.2 mRNA upstream 38830 5132437 ~ 5159096 (+) False bcap31
XM_026928517.2 mRNA upstream 38830 5132439 ~ 5159096 (+) True bcap31
XM_026928012.2 mRNA upstream 67056 5110518 ~ 5130870 (+) True slc35a2
XM_026928014.2 mRNA upstream 90904 5102940 ~ 5107022 (+) True pim2
XM_026928290.2 mRNA downstream 23914 5226140 ~ 5244126 (+) False pnck
XM_026928289.2 mRNA downstream 24540 5226766 ~ 5244126 (+) True pnck
XM_034306550.1 mRNA downstream 316753 5518979 ~ 5582063 (+) True gripap1
XM_034306551.1 mRNA downstream 316754 5518980 ~ 5582063 (+) False gripap1
XM_034306552.1 mRNA downstream 316756 5518982 ~ 5582063 (+) False gripap1
XR_004578621.1 other upstream 434935 4743239 ~ 4762991 (+) False srpk3
TU149628 other upstream 919849 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 1096237 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2965786 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 3266508 1877041 ~ 1931418 (+) False LOC113535242
XR_004578572.1 other downstream 1554537 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 1554537 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2221797 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2221797 7424023 ~ 7430997 (+) True mrps36
TU152202 other downstream 2766009 7968235 ~ 7971749 (+) True LOC113526371

Expression Profile