RNA id: TU152119


Basic Information

Item Value
RNA id TU152119
length 1951
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G128775
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7927566 ~ 7929704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagtttctttatttaacatgtatggaaatAGACTTCACTGTCAGCActttttgtaacagtaagtttctgcaaagtcttcaggacagaggagtttgcactttccagtttctggGTAACAGAAGTTTTTTTCTCACACAAtgttgagagaaaaagagatgctggtgagggaacgactgtttatagctgctacaatgtTCAGTAATAAGAGGAATTAAATTTTGTGGATGTGATTACATTAAGTGTAATTATTTTAGCTGATAGTGATGTCATccaaatttaaaaattgcttaaaatgttagtgctggtaaattgctgtggtataagaggaataaaaaacttctggtgattactttccaataacagtatggttgtcatgttttattacttatataaatgttttgcaATGTAAATGAATAACTTGTCAGTTTTTTGGGCTGTGTATGGATGTGGGCCATggtaatgattaaaatgttatgAATGTGAAAGTTTATCTGTGATGTATACTATACTTGGAActataataattagaaaaagaGTGATTTGAGAAATGATGTTTTACTCTATTCCAAAAAAATCTGTAGTTAAAAAAGTAAATCTCTCCCCAATAACTTTGATTTGCTCTATTCACATAAAgctatgctaaaaaaaaaaacctacaccTTTTAGAAACACCACAGTTCAGTCattcttttaattaatgaaattcaTGATTCATTGGAATTGGGTGCAGAAGCCTTTACATCGCATTTCTAacaatttaaatgaataattcaaaATTCTGGCCTTCAATTTTGTCTACTGTAGGGAAAATATAATTGCAAAAAATCTGTAATTATCCCTTCATCCttaagaaaatacatttttggcCTCCTATTTCTAACTGTAAAACTTTCAGTAATACATGAAGGTGATGTTAGCAGCTGTAGCAGGAAGATGGCTCTCTCCTGGCCAGTACTGTTAATGTATCAGCTCTAGTAAAAGAGGAATTTTCCTCAAAGTGTGAACACAAACCAAAGTCTCTGAATACACTAATACAGTAAACAACACCGGGAgagattttgattttgaaatatCCAGCCGACTTTGTCAACTCACACTAAACCAATATTTAGAATTAGGATGAGAAAAAGATAATTTGTTGGCAGTGTGAGGAGACCTTTATACAATTATTAGAACATTCaaattttcatacattttcatatGTATCAGAGATGTGCAGCCAGTTTGTAAAATATTCATACAAAAGCTAGAAAGGGTTTCATTTCCTTGGCCATTTCCCACTATGTATACATAGCTCATTTGtttcaaatgttaaaaagtcTTTTGTTTTCCCAAAATTCTTAATAAATTAGgaagtaaaatacattttaacagaAACACTCAATATAGCCTTGCAAGAGGTCattataaatgtacaatattAAGATGTTTAAAGGAGCAATACATAGCATTTTCCTTAGCAGTTTCCTTCTTCCTGCTGATCACAGGGTATCTCCTGAGACCTGCCCTGAACCATCACTGCAATTCGACATGTAGAAATATGACGTTATGTGTGTTTTAAGGGAAAATGCTATGGGTTGCAGAGTTAATTTTCctattatttatattcagtaaCGTTAAATAAAACTGAGgcacaccattcacacacatttactcttCGTGactgcgcgcgcacacacgcgcacgcacacgcacgcactcacacgcgcgcacacacactcacacacactcacacacactcacacacactcacacacactttgcattgTCAAGTCCCTGGTTTGGCAGTTGCTGTTTTAACATTTCAAGTGAGCTCAAAAGAGGTGTGTAGTGTTCCTCTCTCTGCATCAATTCATCTTCATTAGCTccaacatcacatcacatctgcTCGTTTGTCCCTCACTTTGTTCCGTAGTTTTGTCCGAGCTTTAAACGCAGCTGAATTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152183 lncRNA upstream 23183 7903500 ~ 7904383 (+) True G128823
TU152143 lncRNA upstream 66055 7856004 ~ 7861511 (+) True smim1
TU152139 lncRNA upstream 66055 7857854 ~ 7861511 (+) False smim1
TU152140 lncRNA upstream 66055 7857854 ~ 7861511 (+) False smim1
TU152125 lncRNA upstream 81409 7842533 ~ 7846157 (+) True G128777
XR_003402768.2 lncRNA downstream 38575 7968279 ~ 7970772 (+) False LOC113526371
TU152198 lncRNA downstream 42650 7972354 ~ 7998833 (+) True G128837
TU152220 lncRNA downstream 49940 7979644 ~ 7994612 (+) True G128851
TU152532 lncRNA downstream 128669 8058373 ~ 8058715 (+) True G129096
TU152534 lncRNA downstream 142028 8071732 ~ 8071942 (+) True G129098
XM_034306604.1 mRNA upstream 5825 7916766 ~ 7921741 (+) True c8h1orf174
XM_026928478.2 mRNA upstream 17844 7873393 ~ 7909722 (+) True cep104
XM_034306638.1 mRNA upstream 17844 7873393 ~ 7909722 (+) False cep104
XM_026928485.2 mRNA upstream 22051 7873393 ~ 7905515 (+) False cep104
XM_026916274.2 mRNA upstream 65996 7858075 ~ 7861570 (+) False smim1
XM_034306715.1 mRNA downstream 25019 7954723 ~ 7959217 (+) True si:dkey-20d21.12
XM_026916892.2 mRNA downstream 187873 8117577 ~ 8122886 (+) True LOC113528372
XM_026914400.2 mRNA downstream 369651 8299355 ~ 8301673 (+) True si:dkey-72l14.3
XM_026926795.2 mRNA downstream 465285 8394989 ~ 8402547 (+) True LOC113534163
XM_026912711.2 mRNA downstream 553379 8483083 ~ 8541426 (+) True ajap1
TU151932 other upstream 496569 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 500009 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1122256 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 1131490 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 3164575 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 38531 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 377460 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2428242 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2626814 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 2940430 10870134 ~ 10874017 (+) False mrpl55

Expression Profile