RNA id: TU152125


Basic Information

Item Value
RNA id TU152125
length 3413
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G128777
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7842533 ~ 7846157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAATTACTGTCGCAGTGTTTTAACACATGGTGACCTGGACAATAACACTTTATGCTCAAGCTTGTCTCATATATGTTAGCCCAATGATTGTAGTCACTATATCCATGTAAATGATTTTCTACAGGTTCCAGGATGGGGGTAAGTGATAAAGAGAAACACTGAGGACAAAGTGCCAGTGAAAAAATATTTGGTCTTATTAGTTAGTGAATATAAGAACATTTATGACATGCTGAATTTTACTGATTGCAGTATAACTAAATATAACATATTGTCTAATTTGGGACATTCACCATTACACAACGTGATGCcccactttaactgtggctgcaTACAGTTTGAGTACACAAGCACCTCAAATTGTCTTTTGCTGCCTCCAAAGTTACAGCAATGGACGTTTTTATCAGTACAAAAACCAATTAGTAATAAGTAGTATTAGTAGTCATTTAATATACTtgcagtgcatatatccacttaaaatgaacacaaataataCAAACTGATTGACCTTTgagtttgtatttataaatatgaacagaaatatatgcattcataagcataaacaaagatatgttaaATTCAAACTTATAGTGAAAAAGTATTCAGATACAAAGTAAGTAAGCAGGAATTAGCTTGTTGTagcattgtggttcaattttggccCCTTCCTCTTGGCAAATCGTTTTCAATTCTCCAAGGTTACAAGGATTCTTcttgcaatttcaaaatcctccataaattttcaatgggATTCAAGTCACAACATTGGCTAGGCTATCCAAGGccttctttcaggtcatcctgcaactcttttcgagtAATTACttgcttctctcttaccttccttatcattggCACACCTATCCGAGGACACTTAGTTGTGTTTCCATGAGCTTTCTTCCTGCATAATATTCACACAAAAAACCGAgcgttttttttaataatgttgtcctgTCTTTATAATGACACCAGGTGCAATTTGCATGAGACCATTGCAGCATGTAAATATTgaactttaattatttttatgtaaactttacatatatatttttaatatagtgtCAATACTTTTTCTCtatcaattttgtttttaaacataccTTTGTTTATGCTCATGAATACGTAATTtttagttcatatttatttatacaaattcaAAAGATAATTGTGTATATGTGAaatggatatatgcactggaagtataacAGAAATCAGTGTGTCTGAATGCTTATTTCCCCTAACTGTAAAGGTTCAATATTTCAATGTTGCTTGAAGAAAGTCCAGTTATTGTATTTGCAATTACACCTCAGTCATTGTGTTCatataaaataagatttaatAACCAAGTAATAAAATTAACATACCAGGAGCACACATTGGACAGCATTCTCCATCAATTTCATACTCAGCAGTGTTGCATGCTTTGCAGAACATTACGCGAAGGACTTTCAGTATTACCGAATATATGATATAAGTGCATGGCAAACGCATGGCAGATGTAGGAGTTTCACTATTTATAGTACAAGGAGGAAAACgtcatctgtgtgttttaagtacacctgaaaaaagaaaaaaattaaatgcaatatATGCATTTGAAATCTGATTAAAGTAAAATCAGATATTAATATAGTATAGTCCTCTAATATACATAATGGCAAATTAGCCCTGATTTTGAGAGGATTTTATCACTCAAGCAACAATTACTACAAACTACAATTAAACATCAAGATTAAGTACAAGAAAAAGGAGGGTCAAGAACTTTTGTTACAGATCACCAAAGAAActaaacatttttcttctgGAATTTAAAGGGAAAAGGGACGACACTTGTTTTATATGAAGGATGTTGTGTCAGGTAAAGAGAGAGCAAAACAGAAGTGAGGAAAGTCTATCAGACTGGAGATGGGTCACAGTGGATTAAACTTAACGTTATGCATGATATAGTGTGACAAATGATTGGAGGTGTGACAAATGTCAGGCACATGACTGTGATATTATTGCAATcagtatgtgagagagagagagagagagagagagagagagtgcagtggTACTAGAGCAGTGGTACTCAAAGTGGAGTCTATAAAGCATAGCCAGGAGatctgtgtttttgtatgtatgtatgtatgtatgtatgttacagtggtggaaatcacaacccaccctATCACCTATTATTACTgaattcttatagttattagcctattGACTGGTCCCTTGAATTGAAtgtgtttaatccaaaccttaataaattaaaaacaaataatcatcTTGGACCCAAAGTGTTCTGTTGAAGGAAAGCTCAGGAACAGACTCTAATGAACAGGCAAATAAAACTGTACAAGTTTAAATAATGAGTCTAACATTTCAGTAGTTTCTAAAGGAAGAAAGGGAAAAATCAGTGTTATGGGATCTGTGTTAAATAAAGGTCCCTAGTCCCTGGAtgcaaaaggtttgagaaccaCATGCAGGAGAGAAATTTGCCAGACATTGCATGTGATTTGCCTTTTCATTTGAATTGTCACACATTATCTGTCTACAAATAGAAAACGCAACTGCATATGCATTTTGAAATTAGTTTTGAAAATACTTCCTTATAGTATGTAGGTGGCTTTGAATAAATCTTTCATGTGAGTGAGGAGAAAAACTTAACTGAAAACACTAGTCATGAAACTTTACACAAAAATAGCATGCATGAGTAAGATCATTTTTTCCAGTGGAAAGACAGGGTGATTCTGAGCAAATCAGTTTTCTCAGGGCtaataaatgcacattttgAGAGATTATCCTAAACCCCCTCAGGTTCTTCTCCCCCAAAAATGGACAAGTATGCTTAGTTGGAAatctgtgaatgaatgaatgaatgaatgaatgaatgaagtcacacacacagtaggacCTCAGTGTAATCTATAGATTattaactcatttaaaatggactagcacacacacacactcagtcacacacacactctctctctctctcacacacacacacacacactctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacaaaagatgaAGCAATAGAAACTACTGGTATACTTGAAGTTCACTGTACTTCCGTTCAGGTTGTTGCTTAGAGCTAAACTATAATTAGCGCCACCTTCTGGACTGCAGTACACGCTGCTATTTAGAAACGTGTAATCACTGATCATGAAGAGCTCTCATCTCACTTACTGTCAGTCATATCAGCATAATTGACACAGTAATTAATGATTTTAGTGCTCACACTAAATGTGACACagatgaaatgtaaagtaaaattgaatttgaattgtcAAAAAATCCTAAAGGATTCCAATAAAAAACTTGTACAGAATTCTGATTAGAATTTCAATCATATTTTGGAACCATTGC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152171 lncRNA upstream 7875 7833516 ~ 7834658 (+) True G128811
TU152165 lncRNA upstream 17424 7824843 ~ 7825109 (+) True G128805
TU152155 lncRNA upstream 25444 7816357 ~ 7817089 (+) True G128798
TU152152 lncRNA upstream 28679 7813655 ~ 7813854 (+) True G128795
TU152104 lncRNA upstream 72165 7769090 ~ 7770368 (+) True G128768
TU152143 lncRNA downstream 9847 7856004 ~ 7861511 (+) True smim1
TU152139 lncRNA downstream 11697 7857854 ~ 7861511 (+) False smim1
TU152140 lncRNA downstream 11697 7857854 ~ 7861511 (+) False smim1
TU152183 lncRNA downstream 57343 7903500 ~ 7904383 (+) True G128823
TU152117 lncRNA downstream 81409 7927566 ~ 7929704 (+) False G128775
XM_026928502.2 mRNA upstream 145964 7694733 ~ 7696569 (+) True LOC113535261
XM_026928361.2 mRNA upstream 155195 7684995 ~ 7687338 (+) True ndufaf2
XM_026928230.2 mRNA upstream 350468 7483745 ~ 7492065 (+) False rab3c
XM_026916283.2 mRNA downstream 10354 7856511 ~ 7861570 (+) False smim1
XM_026916265.2 mRNA downstream 11546 7857703 ~ 7861570 (+) False smim1
XM_026916274.2 mRNA downstream 11918 7858075 ~ 7861570 (+) False smim1
XM_026928478.2 mRNA downstream 27236 7873393 ~ 7909722 (+) True cep104
XM_034306638.1 mRNA downstream 27236 7873393 ~ 7909722 (+) False cep104
TU151932 other upstream 411536 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 414976 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1037223 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 1046457 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 3079542 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 122078 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 461007 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2511789 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2710361 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 3023977 10870134 ~ 10874017 (+) False mrpl55

Expression Profile