RNA id: TU152140


Basic Information

Item Value
RNA id TU152140
length 828
lncRNA type sense_over
GC content 0.39
exon number 3
gene id smim1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7856004 ~ 7861570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTGGCCTGATTATCAGTGAGCAGCAGAAATCACAGAGGCTTTACGACAGTGAGTAAAGGTTCAGCTAAATGAACTCCCAGACCTGCTGCTCTTAAGCAAAGGCATAAATAAGACGGAAAGAGAGGAGCATATCTTCCACTCTGTGTGCACTGAACTTTCGTAAGTACGACTCATACTTAGATAAGGCACTGGCTGTTTTTAACATATTACTTCTCAAACTGCTGAATCAATGCGTCAATAAGAACTGGCTGGTTTGTGAAAGAGTTATTACTGTTTGCTTGAGTTGAAGGTCACCAATAGTTAACAATTAATAAGTGCTTGTGTATTTTTGGAAGACTTAAAGATAGAAAATCTTACAAAAGCAAGCTGTATTTTATATGCAACAAATAAGttgtCTCTATACACTCACAGAAGGTGGGTAGGAGATGGAGTCTGGCGAAGCTACTGTACAGTACAACCGATGGAATGAAGACAACATTAATATGAATGTAGCTGCTTCTCAGACTAGTCTGAATGGGATCTATAACAAACTGTGCACGGGGCAGCTGGGCGTGGTTGTGAGAGTGGCAGGTTCGCTGGCTGTAATGGCTTCCATGTACATCCTCGGCTACGTCACTGGATACTACGTCCATAAATGCTGACACTGTCAAAGACGTTTCACTACTGTCGCCAACAGCATATGATGAATGAATTAACTGtgaagtgatttattcattctttctccATGTATGAAACAAATTTTACTTGAAGTTTCAGTTTTTACCAGTGTTATGAAAATGTTAATGAGAATGCTTTTATCATGTATGATTTTATTTGCTCCACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152125 lncRNA upstream 11697 7842533 ~ 7846157 (+) True G128777
TU152171 lncRNA upstream 23196 7833516 ~ 7834658 (+) True G128811
TU152165 lncRNA upstream 32745 7824843 ~ 7825109 (+) True G128805
TU152155 lncRNA upstream 40765 7816357 ~ 7817089 (+) True G128798
TU152152 lncRNA upstream 44000 7813655 ~ 7813854 (+) True G128795
TU152183 lncRNA downstream 41989 7903500 ~ 7904383 (+) True G128823
TU152117 lncRNA downstream 66055 7927566 ~ 7929704 (+) False G128775
TU152119 lncRNA downstream 66055 7927566 ~ 7929704 (+) True G128775
XR_003402768.2 lncRNA downstream 106768 7968279 ~ 7970772 (+) False LOC113526371
TU152198 lncRNA downstream 110843 7972354 ~ 7998833 (+) True G128837
XM_026928502.2 mRNA upstream 161285 7694733 ~ 7696569 (+) True LOC113535261
XM_026928361.2 mRNA upstream 170516 7684995 ~ 7687338 (+) True ndufaf2
XM_026928230.2 mRNA upstream 365789 7483745 ~ 7492065 (+) False rab3c
XM_026928478.2 mRNA downstream 11882 7873393 ~ 7909722 (+) True cep104
XM_034306638.1 mRNA downstream 11882 7873393 ~ 7909722 (+) False cep104
XM_026928485.2 mRNA downstream 11882 7873393 ~ 7905515 (+) False cep104
XM_034306604.1 mRNA downstream 55255 7916766 ~ 7921741 (+) True c8h1orf174
XM_034306715.1 mRNA downstream 93212 7954723 ~ 7959217 (+) True si:dkey-20d21.12
TU151932 other upstream 426857 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 430297 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1052544 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 1061778 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 3094863 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 106724 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 445653 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2496435 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2695007 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 3008623 10870134 ~ 10874017 (+) False mrpl55

Expression Profile