Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402768.2 |
| length | 391 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113526371 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 7968235 ~ 7971749 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU152117 | lncRNA | upstream | 38575 | 7927566 ~ 7929704 (+) | False | G128775 |
| TU152119 | lncRNA | upstream | 38575 | 7927566 ~ 7929704 (+) | True | G128775 |
| TU152183 | lncRNA | upstream | 63896 | 7903500 ~ 7904383 (+) | True | G128823 |
| TU152143 | lncRNA | upstream | 106768 | 7856004 ~ 7861511 (+) | True | smim1 |
| TU152139 | lncRNA | upstream | 106768 | 7857854 ~ 7861511 (+) | False | smim1 |
| TU152198 | lncRNA | downstream | 1582 | 7972354 ~ 7998833 (+) | True | G128837 |
| TU152220 | lncRNA | downstream | 8872 | 7979644 ~ 7994612 (+) | True | G128851 |
| TU152532 | lncRNA | downstream | 87601 | 8058373 ~ 8058715 (+) | True | G129096 |
| TU152534 | lncRNA | downstream | 100960 | 8071732 ~ 8071942 (+) | True | G129098 |
| TU152540 | lncRNA | downstream | 109195 | 8079967 ~ 8080277 (+) | True | G129104 |
| XM_034306715.1 | mRNA | upstream | 9062 | 7954723 ~ 7959217 (+) | True | si:dkey-20d21.12 |
| XM_034306604.1 | mRNA | upstream | 46538 | 7916766 ~ 7921741 (+) | True | c8h1orf174 |
| XM_026928478.2 | mRNA | upstream | 58557 | 7873393 ~ 7909722 (+) | True | cep104 |
| XM_034306638.1 | mRNA | upstream | 58557 | 7873393 ~ 7909722 (+) | False | cep104 |
| XM_026928485.2 | mRNA | upstream | 62764 | 7873393 ~ 7905515 (+) | False | cep104 |
| XM_026916892.2 | mRNA | downstream | 146805 | 8117577 ~ 8122886 (+) | True | LOC113528372 |
| XM_026914400.2 | mRNA | downstream | 328583 | 8299355 ~ 8301673 (+) | True | si:dkey-72l14.3 |
| XM_026926795.2 | mRNA | downstream | 424217 | 8394989 ~ 8402547 (+) | True | LOC113534163 |
| XM_026912711.2 | mRNA | downstream | 512311 | 8483083 ~ 8541426 (+) | True | ajap1 |
| XM_034306375.1 | mRNA | downstream | 512311 | 8483083 ~ 8541426 (+) | False | ajap1 |
| TU151932 | other | upstream | 537282 | 7424023 ~ 7430997 (+) | True | mrps36 |
| TU151927 | other | upstream | 540722 | 7424023 ~ 7427557 (+) | False | mrps36 |
| XR_004578572.1 | other | upstream | 1162969 | 6756763 ~ 6805310 (+) | False | phf19 |
| XR_004578571.1 | other | upstream | 1172203 | 6756763 ~ 6796076 (+) | False | phf19 |
| XR_004578621.1 | other | upstream | 3205288 | 4743239 ~ 4762991 (+) | False | srpk3 |
| TU152708 | other | downstream | 336392 | 8307164 ~ 8312656 (+) | True | G129247 |
| TU153960 | other | downstream | 2387174 | 10357946 ~ 10358315 (+) | True | G130390 |
| TU153993 | other | downstream | 2585746 | 10556518 ~ 10563561 (+) | True | zmynd12 |
| TU154218 | other | downstream | 2899362 | 10870134 ~ 10874017 (+) | False | mrpl55 |
| XR_003403321.2 | other | downstream | 3651530 | 11622302 ~ 11633844 (+) | False | LOC113530800 |
