Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU152881 |
| length | 214 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G129407 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 8549769 ~ 8549982 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU152875 | lncRNA | upstream | 3773 | 8545770 ~ 8545996 (+) | True | G129401 |
| TU152785 | lncRNA | upstream | 62322 | 8487231 ~ 8487447 (+) | True | G129318 |
| TU152673 | lncRNA | upstream | 319633 | 8228740 ~ 8230136 (+) | True | G129218 |
| TU152621 | lncRNA | upstream | 364581 | 8183169 ~ 8185188 (+) | True | G129170 |
| TU152569 | lncRNA | upstream | 421339 | 8128161 ~ 8128430 (+) | True | G129125 |
| XR_004578601.1 | lncRNA | downstream | 129660 | 8679642 ~ 8717232 (+) | False | LOC117597837 |
| XR_004578600.1 | lncRNA | downstream | 129660 | 8679642 ~ 8716929 (+) | True | LOC117597837 |
| TU152914 | lncRNA | downstream | 173682 | 8723664 ~ 8724070 (+) | True | G129440 |
| TU152913 | lncRNA | downstream | 175470 | 8725452 ~ 8725888 (+) | True | G129439 |
| TU153099 | lncRNA | downstream | 453487 | 9003469 ~ 9006553 (+) | False | G129621 |
| XM_026912711.2 | mRNA | upstream | 8343 | 8483083 ~ 8541426 (+) | True | ajap1 |
| XM_034306375.1 | mRNA | upstream | 8343 | 8483083 ~ 8541426 (+) | False | ajap1 |
| XM_026926795.2 | mRNA | upstream | 147222 | 8394989 ~ 8402547 (+) | True | LOC113534163 |
| XM_026914400.2 | mRNA | upstream | 248096 | 8299355 ~ 8301673 (+) | True | si:dkey-72l14.3 |
| XM_026916892.2 | mRNA | upstream | 426883 | 8117577 ~ 8122886 (+) | True | LOC113528372 |
| XM_026925547.2 | mRNA | downstream | 352266 | 8902248 ~ 8915811 (+) | True | LOC113533404 |
| XM_026916436.2 | mRNA | downstream | 400232 | 8950214 ~ 9002824 (+) | True | sema3b |
| XM_026916445.2 | mRNA | downstream | 400232 | 8950214 ~ 9002824 (+) | False | sema3b |
| XM_034306645.1 | mRNA | downstream | 401010 | 8950992 ~ 9002824 (+) | False | sema3b |
| XM_026938816.2 | mRNA | downstream | 615996 | 9165978 ~ 9169576 (+) | True | pym1 |
| TU152708 | other | upstream | 237113 | 8307164 ~ 8312656 (+) | True | G129247 |
| TU152202 | other | upstream | 578020 | 7968235 ~ 7971749 (+) | True | LOC113526371 |
| TU151932 | other | upstream | 1118772 | 7424023 ~ 7430997 (+) | True | mrps36 |
| TU151927 | other | upstream | 1122212 | 7424023 ~ 7427557 (+) | False | mrps36 |
| XR_004578571.1 | other | upstream | 1753693 | 6756763 ~ 6796076 (+) | False | phf19 |
| TU153960 | other | downstream | 1807964 | 10357946 ~ 10358315 (+) | True | G130390 |
| TU153993 | other | downstream | 2006536 | 10556518 ~ 10563561 (+) | True | zmynd12 |
| TU154218 | other | downstream | 2320152 | 10870134 ~ 10874017 (+) | False | mrpl55 |
| XR_003403321.2 | other | downstream | 3072320 | 11622302 ~ 11633844 (+) | False | LOC113530800 |
| XR_003403311.2 | other | downstream | 3072328 | 11622310 ~ 11633844 (+) | True | LOC113530800 |
