RNA id: TU153100


Basic Information

Item Value
RNA id TU153100
length 3316
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G129621
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9003469 ~ 9006784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCAATCCCTGTACACTCAGCCATGAAGTCAACTACATGAATATACACTCTATAAACACTCCAATTTACCCAAGCACAAattacatacagacacacacacagacacacacaaacataaaatgaTGCAATAATTATTCGTACAGACAAAGATGATCTCAAAAAGTGCAGACAAGGATGATGTCATTCTGAACAAATCTGTCTCATCGTGATAACGATTCCAAATGGAGGAATAATCAAAACCACGGACAAAGCATTACACACATTCAATACCTACACAAACTGTACAGCGGTGCAATTGCATGCATTGTCTtggaacagcacacacacttaaacacatgATCTGcttctagaaaaaaaacttgtatatttgccatgtgtttgtgtgtttgtgcttcgTGCTGTTTGTGTTCTATAGATTAGAATTTTCTCTATATCCTCTAATGTTCTCTGTACAACCAAAACCACTACTTCCCTGAGCACCACTAGCTgcctgttaccatagaaacctTTAAAGCTGCTCTCTGGTGTTAACCATCAGCAGGGAATGGGGAGAAAGGAACTCAAAACTGTGAACTTACCCACAAAATATCATCAACAGCAAATTTTGGAAGAGAGATCCTTTGAGGGTGTGGCCTGGCTGCTCACTGGCGCCACCTTTTGTAAGGAAACACTTTGAGCTGCTTTAATGGAGGTTTTTGCTTCCACTTTATCCAAAGCACATTTTGTGAGATCAAATGGGGGTAGGGAGGAGGGTCACCCGTGTCCACTATACCTGTGcgatgtgtgtttgttttctttacgATGACGTGTGCTAGGCTTTTAGAGACATTATCAGGCACAACATCAAAGCAGgggtgcattatgggaaaatCAGACGAAAGGAGGTGTGGGTAAAGAAAATAAGTTATGATGCGGAAAAAAGGATGTTTTGGTTTCGAACCCTCAACTAATCTGTTGAGTATTCACAAGACaagatgattgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtatttcatagCTCCCACAGTCACATTAACTCTATATTGCTCATATAGCACGTTATTTAAAGTAGCGTTCattaattttaaagtaaaaacacTAAGCCTCCTATTATAATGACATTAGATTTACCCATCAGTCCTTTCTGCTGATGTAAGGGTGTTTTAGGTTAGATGATAAATGACAGATGATAATTCCTTCCTCCCCTAGACCTAAGTCAGCCAGTTACAGTTTTCCTGTgctattaataaaaatgcaggCTGTGCTCCATTTCTTATACTACCACACACAAGCAGCATCACAGAAAGGGGAATAGTGGGGTTGACTACCCAGAGCTCTAGGTGGAGTGGCTTGgatttgtattttcattaaagAGATATGAAGAATGCATTTTCATGGAACATCTCTGACTACTAAATTTGATGTCAGAAATGTAAGGCAGTTTTGGGAAATATTTTCTCTTTGACTACTTCCTTGGTTCCAAACATGTCACTATTATTTTTTCCCAGAGTGGTTTGTGGTGTTGGCTTGTATGAGTGTGAATGAAAATAATGAGTCAGAGCACTAGAAAGGTGAACTGGTGGTTTTGGTTTTCAGCACTAGATGGCAGCTTGGTGTTGTGGAAGAAACATGAAGCAATCATACTTAATATTGAGTTAAAATATCACTTTTCAAGActacaaagagagaaagagatttcATGAAATGTGCAGGTACTAACATGTATGGCTACAATGATGGTGCTCTCTTCATATTCGTCCCTTTCCAAAAGTATCTAGCGCACAATTTACCGGTCAATAACACAGcagcttggttttttttttaaatgcagaatgATGAAATATTAATCAAGCGTATTCATATGTTCTAGTTTTTCTACAGTGTTGGATTTTAGGGGGTAAAGTGCTAACACTCTGGTAATGagaattgtaaataaaaaaataaacaatgtcacATATGCAAATAGGGCCTTCTGAGAAATTTCAAATCCAAGGCAacattctcagaaataaaggtacaaaactgtacttttccttgtcgctAGGCTGGTTCCATCAATGATGGGCATATTCTGTACATTTCTTATGTATCTTTTCTTTAGGAAGGTGCATGCATGGTGAACAGTGTACCTTTAGTTTTTacagtaaagctttaaaagtaatggtccttaaggtccaattatgtacctacAGGCACAACAGATGTACCtggatggtaccaccccagcaactAGGAAAAGCAGAGTGTATTTCTAAAAGTAAATTTCAGTTTCTGGACCCCTTTTCTTGAAAATGCCAATCGTTAGGCCTGACATCTCAACCTATTTTCCCTCTGCAATCAGTTCCACTAGCTATTATCAGTTCCTTAAGATATAAGATAAGAGTGTATATGGCTGAATAGTTTTGTTCTATTTATAATGTTTCATGATGTAAAGAACGGTTATGCCTGTTTCTGTTCATTTGCATGACTTAAAAAAAGATGTGTAGTTGAGTGTTTTGCCAATACAGTAGACAGGAAGCACATTGGCACATCTAATGTTCTGATGACATATTTAAGATGTAATAAGCTAATATGTAGTGGTGAATTGTGCTGACATTGACATTTGTAATATATCCATTCTTCTGaaaactggagaaaaaaaagtgtgtatattTTGAGGTATatgttcttttcctttttaaaccatatttaaGGACTCGTTCTGAAACTCTCCCTGTgtgaaatgacatttttctcttttaacactgttttttttttctaaaaaaaaaaaaaaattaaccaaatgACCCAGACCAGCTCACTGATTTCCTTGCCTTGTGACTCTTCTCATAttctgagagacagagtgtctctgtgtgtgtctatgtgtctgtgtgtgtgcacgcgtgcgactgtgtgtatgtgtgctcgtacatgcatgtgtgtgacacattaacatgtgtatgtgtgtttttgtgtgtctacTGTTAGATGTTATAACTGTAAACTATTGATTAAGTGGGACTTCATTTTCTGGAGAAGTCAAAGGTTGAAGGCCAAAGTTGACGTGGAACACTGTAGTGACTATTCCTATTTCTATGTGGTTTGTTGCATCAGACTGTATTTGATTaacacaaagaaataaacagttaCTTCAAAATATATCAACTATATGGATTCATGGTTTGAtgatattgaattgaattaattcaGTATCAATTTATAGATATATTATGGGCACAATGGGAGCTGTATTGGCAGAAAATCAGAATATCAATACTGTTAACAACATACTCTATCAGTATATATTGTAAAACCAGCTTTTTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152913 lncRNA upstream 277581 8725452 ~ 8725888 (+) True G129439
TU152914 lncRNA upstream 279399 8723664 ~ 8724070 (+) True G129440
XR_004578601.1 lncRNA upstream 286237 8679642 ~ 8717232 (+) False LOC117597837
XR_004578600.1 lncRNA upstream 286540 8679642 ~ 8716929 (+) True LOC117597837
TU152881 lncRNA upstream 453487 8549769 ~ 8549982 (+) True G129407
TU153191 lncRNA downstream 106000 9112784 ~ 9123869 (+) True G129704
TU153195 lncRNA downstream 113154 9119938 ~ 9134935 (+) True G129707
TU153299 lncRNA downstream 302719 9309503 ~ 9312451 (+) True G129805
TU153298 lncRNA downstream 304906 9311690 ~ 9312451 (+) False G129805
TU153327 lncRNA downstream 317924 9324708 ~ 9337950 (+) True G129831
XM_026916436.2 mRNA upstream 645 8950214 ~ 9002824 (+) True sema3b
XM_026916445.2 mRNA upstream 645 8950214 ~ 9002824 (+) False sema3b
XM_034306645.1 mRNA upstream 645 8950992 ~ 9002824 (+) False sema3b
XM_026925547.2 mRNA upstream 87658 8902248 ~ 8915811 (+) True LOC113533404
XM_034306375.1 mRNA upstream 462043 8483083 ~ 8541426 (+) False ajap1
XM_026938816.2 mRNA downstream 159194 9165978 ~ 9169576 (+) True pym1
XM_026914409.2 mRNA downstream 168315 9175099 ~ 9180830 (+) True LOC113526950
XM_026914420.2 mRNA downstream 287596 9294380 ~ 9295483 (+) True mc3r
XM_026929048.2 mRNA downstream 462846 9469630 ~ 9471279 (+) True cebpb
XM_026922619.2 mRNA downstream 504155 9510939 ~ 9519258 (+) True adipor1b
TU152708 other upstream 690813 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1031720 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 1572472 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 1575912 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2207393 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 1351162 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 1549734 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1863350 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2615518 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2615526 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile