RNA id: TU153354


Basic Information

Item Value
RNA id TU153354
length 3427
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G129849
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9450562 ~ 9495730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTAAAGTCTTCCTATTGGGAGACAACAGAAAGGCATCAAGgcattatttttgatatttaagTTGACCGTCACAAAACCCACTTCAACCAAATCCACATGAAACTGTCGCAGAACAAAACTTGAATCGTGTTAACTAATCTGAGACCTTGAGGCGTGTGACATCAAATACGAAAGTGCTACAGACATACTAGTTACCTACTTTGAACTGCTGCCTTCTGTTACATAATCTTCAAGCCAAATACATCAAGACAGGACATGtacaatcaaataaaattaaaaataataataataataataatgacatccAATTATTTTTACCCCTATGCTTGTGAAAGTGAATAAATGGACACTGACATTAAAATTTTGCTTTTGTTCGTTTTAGTGTTTGTCTGAGCACCATCATAAGATCGTCCAACATACCTAAAGTGATAAAAGTAGCCAGTTTAGTACAcctcaataataatattaacataataataactTCAGACAACAACAGGCAAACGTTTTGACACTTCATGGGCAAGTTAATAAAATTCCTGCAGGTTATAAATCCAATGCAACAGCTATACAGTCGTAACATGGAACCTCAAAGACTGTAACACGCACAGTCACAAGTCACTTACACACCATTACTACTGACAGACTGTTCCAACCAAggcatttaaacagttttttctacattttcataCTGTTGACCTATTGGGAGATTATGACCCAAAGATTATCAAATTCATATGGATTTTTACATGGGATCCAACATGAATGTATGACTAGattattcacaaaataaaaacacagctccaGTTCACGGAATTTCTGTGCGAATATTCCTTTCTACTGCCGTAGCTAGAAGTGCTTTACTGAGAAAAATTGTGCATTTACCCCTTTCAGTTTTCCATGGCTTAAAATAACACCAGTCTAAACACACTACAACATGCCAATCAAGTTAAATAATCTCAAATCAGTATCAAATGATGAAAACACCACACTTAAAGTTTAATTTACAAACCCATACTTGAAAAAAATACTACagaaaaacaatgtaaaaaaaatgtctgaaaatgtgcacatttcacaaatcatttttgaaaataaaaaaaaaaacatcctggcAGTTGTTCTTATGCTCCATATAATTTGACACCTTTATACTGAATGACCTTTTAAAGTGTTGACCCATCACATATCCAACAGTACTAATTAAATACTTCTGTATACTGCcccataacaaaaaaaaaaaaaaaaaagattattcaaAGACTAGAGCTTTAAAAATTTGGCATACTGGCATATGATTGAACATTTCATACATAGGAAGCACCCTATTACCATATTACACATTtgtttgttagatttttttttccatttgaccAGACAAAGTTTAATATTTGACTCTCACGGACAGATTGGAAAAGGTCTAAACGGAGGACTACACTCAATTAATCACAATTTGTTAAAGTACAGGAGGACAAAATCAAGAGCTGACAAagactaaaaattaaaaaatggctcaaataaaacacctttggacaaaaaaaaaaaaatcaagcgttcgtaatttttttaatataataccTTGTTTATACAAGAAAGCTATTCCTTCTAGACACATCactcattatatcattataaattcatataatttcaagtaataatcttaaagaGCGTGGTTGTAAGGAGGAATTCTGACCAGCACTAGCTAATTCATATATATACTTctccagaaaaaaacaactatatTTATCCTATTTTTTCCCTAAATCAAGCAAAGCTGGGTAGTCTGTTCATGGCAAGTAGTAAACTATTACAAAACATAATTTTGTGCAGAGAATATACACATAGCTTACAGTCTCAATACATACTGAGAACAAACCAGTGGAATAAGGCGAGTGACTAGGTTAGTAACTCAGTGTTAAGCGTTGCTTGATATTGACGTTATTCAAAAACTACAATATGATAATGATTAATATTCTTTTGGTCAATTTGTACACATTCTCCAGTTAGAGAGCCATTATAAATGGCTTTATAACTAGCTGTTGGAAGTGTTATAATATTCTTGAGGGCAGCTTAACATGCTGAAACTGATCTAAAaccttctgtctctcacacGAGCGACGGGCATGTAACGACTGTGTAAAGACACAGTATCATCCAACTAAGCAGCCATGCTGAACTATGTTTAATTGATCGTTTAAGACAAGAAAAATAAGATTATATAAATAAGTCTACACAAGTCTTTCCTATGCATCTAAATTGTAATTAGATTTAGGATCTGCTTAGCTCTTAAAACTCCCAACGATAATTCAGTTTAGAACACAAGTAACCATTACAAATAGGTCGTTTTTATGTGTTTGGTAGAGCCATAGGTAGAGCCAGAACATTAactggagagaaagaaagggggggaaaaaaaaaaaaaaaaaaaaaaccagaagaGAAACAAACACTGTATATTTGGGAAGGCTAAACACACTGCCAAAGCCACAGGAGTCCATGTGTGGCAGTTATGGTGTACGCAAACTGCACTGATTTTTCAAAACGCTGACTTAAACTGTGACACAGATATGTATTCACACAACCTATTACTCtgacacaaaaacagacatcctctatacacacacagtagacacacagacattccCTTGCTTATTGCAGCAATAATAAAAGGGTTTATTTGGATAAGTAAAACCTGGATGTCATATTTGGGGGACACCTGAAATGTGAGGCCCTGAGCTATCCAACAGACagactgcttgtgtgtgttgtgtttgtgtcgTGTAATAGGGTACAACAGCAGTTTGGCTAAGAAAGTCTTTTCTCTACATCCTTTCCCAAACTGTGTAGGGAAAAGAAGTGGGGAAAATTTTGAAACGAACAGAGACAGGGCTTGATGGCAGGTGTCTGTCCCTctccatcatctctctctctctcttttttctaattctctctctctgtcagaggAGGTAGAGAGAGCTGGCTGGCCAGCAGAACCTATTCACCCACCCTCACACTAAccacagacagagggagggacagagagagagctagagaggcaggaagacagacagagagagagagagaaagagagagacagagagagagacacagagagagacagagaaaacgATAATCAGTGAAAGTAGGCGCGGTAACAGATGTATGTTCCCAGAGTGAgcacagcgcacacacacatgctagcCAGCAGTGGGCTCCACTGTCCGGCAGGCCTCTTCTCTGGTGGTGACCGTGATGGTTTGGGCGGAGCTTCTGTCGTCGCGGTGACTGGGTCGCTTGGCTTTGGAGCGTTGGCATCGGGCTCGTCGCCAGGCATCGTCGGCGTCTCAAACTCCGCTGCTGCCGAGGCCGCCACCGTTGCCACTGTCCGTCTGCGAAGCTCCGGTTCTGAAGGAGCACTGGGAAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153327 lncRNA upstream 112612 9324708 ~ 9337950 (+) True G129831
TU153299 lncRNA upstream 138111 9309503 ~ 9312451 (+) True G129805
TU153298 lncRNA upstream 138111 9311690 ~ 9312451 (+) False G129805
TU153195 lncRNA upstream 315627 9119938 ~ 9134935 (+) True G129707
TU153191 lncRNA upstream 326693 9112784 ~ 9123869 (+) True G129704
TU153514 lncRNA downstream 104465 9600195 ~ 9602532 (+) True G129971
TU153546 lncRNA downstream 165516 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 176337 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 219926 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 537620 10033350 ~ 10033565 (+) True G130231
XM_026914420.2 mRNA upstream 155079 9294380 ~ 9295483 (+) True mc3r
XM_026914409.2 mRNA upstream 269732 9175099 ~ 9180830 (+) True LOC113526950
XM_026938816.2 mRNA upstream 280986 9165978 ~ 9169576 (+) True pym1
XM_026916445.2 mRNA upstream 447738 8950214 ~ 9002824 (+) False sema3b
XM_026922619.2 mRNA downstream 15209 9510939 ~ 9519258 (+) True adipor1b
XM_026922629.2 mRNA downstream 15209 9510939 ~ 9519258 (+) False adipor1b
XM_026927548.2 mRNA downstream 25724 9521454 ~ 9537110 (+) True LOC113534601
XM_026927664.2 mRNA downstream 43103 9538833 ~ 9543279 (+) True tuba5
XM_026915443.2 mRNA downstream 51576 9547306 ~ 9573038 (+) True kdm5bb
TU152708 other upstream 1137906 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1478813 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2019565 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2023005 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2654486 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 862216 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 1060788 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1374404 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2126572 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2126580 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile