RNA id: TCONS_00000687


Basic Information

Item Value
RNA id TCONS_00000687
length 5632
RNA type mRNA
GC content 0.46
exon number 18
gene id XLOC_000402
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33969015 ~ 34201195 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAACGAACACCCTCTAGTGCTGACGAGCTGGTCTTCTGTCTACATCCTCAAAACTCTTGGGCTTTCCAACCTCAAGATCGCGTTTCGCGCGCCAGAGAATAAAGCGTCGCTGAGGCTCGTGCCGGATTTTCTCTGCGTGCACGAGACTCATTCGACAAGTTTAAGCGCGTGATACTGAACGGACTCGCGTCGACGGTATATACAGTCAAGGAGAGAAGAGCGAGTTAACGTATAGAGCAGGGGAAAGCGCGTTAATGGCTATTGACGACTGGATACAACACTTAGTCTAGTTCGTTATTTCAAGTGCTGACAACCAGACAGCGTTAGCGAAAACTCATCTCACAGTCTCAACCCTATTCATGGGGTAAAttctgtaagtttttttttcaagtgcCGCCGGTAGTTGTGCGCGTAATGGGCTGGCATTTCAGTCGCTCTCTATCCGCGTTTTCGCGGTGCGGGGAACGAGGTGGTTGACACGCAAAATCGTTTACAACAGTTAATTGAACATTGTCACAGGATATTTTGTCGTGGACTTTTTTCTTTAGTGACTTACGTGCACAACTGGATATAAAAATGACTTTTCAAAGGTTTCTCTTCATGTTTGCTTTACCGGGATTGATGTTGTCGGACCCCGGGCATCCAAACCAAGtggTTCTTTTGGACACAACTGCTGTACTGGGAGAGCTAAGCTGGAAGACCTACCCAATAAATGGGTGGGACGCCATCACAGAGATGGATGAGCTTAACCGGCCCATCCACACCTTCCAGGTGTGCCACGTAATGGAACCAAACCAGAACAACTGGCTCAGAACAAACTGGATACCCCGTCAGGCTGCGCAGAAGATCTACGTGGAGCTGCGCTTCACCCTGCGGGACTGCAACAGCATCCCATGGGTCTCTGGCACCTGTAAGGAGACTTTTAACCTCCTCTATTTGGAGACAGATGAGCCACATGGTGCCAATGCTCATTTTCATCCCAACGACTATGCTAAAATTGATACCATCGCCGCAGATGAGAGTTTCACACAGACAGACCTGGGCGATCGCGTTTTGAGGTTGAATACTGAAGTTAGGGAAGTGACGATAGCTCGTAAGGGTTTCTACTTGGCCTTTCAGGATGTGGGCGCATGCATTGCCTTGGTGTCCGTAAGAGTTTATTACAAAAAGTGCCCATCTACCCTGAGAAACCTTGCAGCCTTCCCTGACACTGTACCGAGGGTGGATTCATCTTCATTGGTGGAGGTCAGAGGCGCGTGTGTTGAGAACGCAGAGGAACGTGACACACCCAAGCTGTACTGTGGAGCTGATGGTGATTGGCTGGTGCCGCTGGGCCGTTGTGTCTGCAGCATAGGCTATGAGGAGAGTGACGGTCTTTGCCTTGCCTGCAGACCTGGGTTCTACAAAGCCTTTGCAGGAAACATTAAATGTTCAAAGTGTCCCCCGCACAGCTCCAGCCACGCCGAGGGTTCAGCACAGTGTCACTGCGAGAAGAACTACTACAGAGCCAGCAAAGACCCTCCAACCATGGCCTGCACACgtcCGCCTTCCCCTCCTCGAAACTTGGTTTTTAACATCAACGACACTGCTCTGTTCCTGGAATGGACGCCACCTAGTGACACCGGTGGTCGCAAGGATATAAGCTATACTGCGTTATGTCTTCGATGCGGAGCTGATGGGCAGGACTGCGAGCCTTGCAACAGCAACGTGCGTTTCGTACCCAAACCAACAGGCCTCACAAGCACCTCTGTGGTGGTCCAGGACTTTGTGGCCCATGCCAACTATACTTTTCAAATTGAGGCGCTGAATGGAGTGTCAGGCTTGGGTAGATCTATGAGACAGATCGCCAATATAACCGTCAGCACAGAGCAGGCTGgTCCGTCTCTGGTAGGTGTGGTGAGAAAAGACTGGGCATCTCAAACTAGTGTCGCCCTCTCATGGCAGGAAACTGAACAGCCACATGCTGCCATCTTGGACTATGAGATTAAGTATTATGAAAAGGAACAGGAACAGTTAAGTTATTCATCTACACGTACAAAATCTCCAAGCGTGATAGTGACAGGACTGAAGCCCTCCACAGTTTATGCGTTTCATGTGCGCGCTCGAACCCTCGCTGGCTACAGCAGTTACAGCCCCAAGTTTGAGTTCGCCACAGGAGATGAAGACTCTGAGGAGGCAGTTGATCAGGGCCAGGTGTTGGTGATTGTTACAGCCACAGTGGGGGGCTTCTCTCTCCTCGTCATTCTCACCCTCTTTCTTCTCATCACTGGCAGGTGCCAGTGGTACATAAAATCAAAGATAAAGTCAGAAGACAAAAAAAGGACTCAATATCAAAACGGGCACGTGCCATTCCCAGGATTAAAGACGTACATTGACCCTGACACTTATGAGGACCCTTCACAGGCCGTTCATGAGTTTGCCAAGGAAATCGATCCATCTCGTATCCGAATCGAAAGGGTCATCGGAGCAGGTGAGTTCGGCGAGGTGTGCAGTGGCCGTCTCCGTATACCAGGAAAAAAGGAAATTCCTGTGGCTATAAAGACATTGAAGGGAGGATACACTGAACGTCAGAGAAGAGACTTTCTGCGAGAGGCGAGCATCATGGGACAGTTCGATAACCCTAACATCATCCATCTGGAGGGTGTAGTCACAAAGAGTCGGCCTGTGATGATTGTGGTGGAATACATGGAGAATGGCTCCTTGGACTCTTTTCTGAGGAAGCATGACGGGCACTTCACTGTGATCCAGCTGGTTGGTATGCTGCGTGGCATTGCCTCTGGTATGATGTACCTGTCCGACATCGGCTATGTCCACCGAGACCTGGCAGCCCGAAATATTCTAGTGGATGACAACCTGGTATGTAAGGTGTCGGACTTCGGTCTGTCCAGGGTGCTGGAGGACGACCCGGAGGCAGCTTACACCACCACAGTTTTGTTTTGCCAGGGGGGTAAAATCCCCATCCGCTGGACAGCTCCGGAGGCCATTGCATACAGGAAGTTTTCCTCAGCCAGTGATGCGTGGAGTTATGGCATTGTCATGTGGGAAGTGATGTCATATGGGGAACGGCCCTACTGGGAGATGTCCAATCAAGATGTGATTCTGTCTATAGAGGAGGGCTACAGGCTCCCTGCACCCATGGGCTGCCCCGTGGCCCTGCACCAGCTCATGCTgctctgctggcagaaggaacgCAGCCGGAGACCACACTTTAATGACGTGGTCAGCTTCCTCGACAAGCTCATACGCAATCCCAGCAGCCTCCTCACACTGGTGGAGGATGTAAATAGCTTCCCAGAATCCCCCGAGGATCTGCCAGACTACCCTCTCTTCATATCTATCGGTGATTGGTTGGATTCCATCAAAATGAGTCAATACAAGAACAACTTCATTGCAGCAGGATACACAACCCTGGACTCCATATCCACCATGACCATTGATGATGTAAGAAGAATTGGAGTGTCTCTGATTGGCCACCAGAGGAGGATAGTGAGCAGCATACAAGCACTACGACTGCAGTTCCTCCACGTTCAGCAGAGTGGCTTCCATGAAAATTGGACCATTTACCCGGAGGAACCACAGTAGGCAATGAAACAATGGCAGCAGTCTGTTGTAATGAAGATGTCATCTGTCAATCATCCTGCAAGTTCTGTGATTGACTGGACTCCAAACTCTGAGAACTCTAAATAGTATATTtgctattttaatgtattaaattatgtGTCTTAAGAGATTTTTCTGGTTTATTCATCAAGCTTCCTCCTGAGCCTCTGAATGGAGAGACTAACGGATCCGTTGAATGTCTTCAGCTTTAAATGGCTATTATACATTGTTTATCACATCTGATATTTATCCTGATATTTATATGTACGTGCGACTTTGTTTCGTTTGGGTTGCGTTTTATTGAGTTCGTTTTCTAAGCAATATGTGCAGTCTTTAGAAAACCAAGAAAAGAGCCAAGGTAGGGAGTGAAGAGCTTTATCTtgctctgttgaaaaaaaaaagccacacaaaaccattgacttcctcaGGCTGTCAGCGAGGTGGTAAAAGTCTGACCTTTCAGAAGACTGAAAGCCATTTTCTTACGTCTGTGCACCACAGTCAAATTGAACAAACTTATACAAATCCACTCCGAGAGAGATTTGAGAACTGCACACTTTTGTTCAGTCTACTATGGTGTACAGTATCTATACACACCTCTGATATGTTATCAGTTTGCCTTGCGACTATGAAACTATTGTCAGTGGAGAATCATCGAGGTGACAGTTTTGCAGTAAAATGTTCTCATAAAGAGAGCATGACAGTATAGCACTCTGCATGTTGGCAAgaatttgttttggttttttccccaacactgcaGGTCTACATACATTACTTCAACATGCTCATTTGCAGTCTCCTTCGCTTCTTCCAGACTTACAAACGCACAATACTGTACCATGTTCAttagctgatatatatatatatacccccaTTCTTCGACCGCATGGCTCTTTGTGTCTGAACACATATGTTCGGGACATAGAGACCACTTCACACTGTACTTCAAGTTGCAATGTGCAAATGTCTGAAGCGCAAGAGAAACCGTGTGCTTACTTCAAGCAGGGCAAGGGAAAACTCTGGGTAATCAGGTCATAATGTATTGTTCATAGTAAACTAattgtacattattttttataatttataaagagTACTGAGAGATAAAGGTGATATAggttgaatgtttgtaaaaataaatgataacagaTATGTTTGGTGTTTTTTATGAGTctgacttacacacacacacacacacacaaatgcttgtgcagcccaggctcattattgGTACCCCTATATACGTTTATGGAGAGCACACATTACATCCCAggagccactttttttttttttttttttttttgcagtttttgttttttgcaaatccaccagagggagCTGTGTACACCTTTTTCGatctcaaattttctctcgcgagtgccatttgcacctgctgttttggtgtaaatccaccagaggccactgtcaactgactgaccgaGCGAGCGAATCCCCCACCCACCTCCtgctctaaacccaaccgacagtgttttcaaaagcaatccagaaaaagaggctgatttttaacacattttcggATCGTACCATATTCTAACGTGGTtagttacttgtttattttattttttgtttttattgtacctgctttctggaaccgttttttgCCACAATCGATCCCCGTCGTTGCAGTCGATTCCTCTCTACATCTCATGTCCACCGATGCACATGGCAAGCTGCTGGACAAACTGGCAACGTCGAAAAAACCTGTTTGGagataagtggtcagctggtagtgcaaaaagaaacagaagctgtcggTGGCGTCATACCGCATTctaatgttcattttaaagacgaattGCAGCCATTTGTAGCTCTGGCTTCGTAATTTGccctctccaaaaatgtatacttgggtacatttttacaatgagcctatgttgctctTGTATATATGGTTTACTAGGACtctctatagaaaaaaaaaaaatttatccctgtaaaaaaaaaaaaaaaaacacattttaatggcCTTGACCAATCCAACGCTCACAGGAAACCTGTGAAAaaattt

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007411 axon guidance biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04360 Axon guidance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-090311-43 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human EPHA6 (EPH receptor A6).

Ensembl:

ensembl_id ENSDART00000146530

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000683 lncRNA upstream 267121 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00002850 lncRNA upstream 450214 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000651 lncRNA upstream 1950922 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 1956659 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 1957243 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00003084 lncRNA downstream 30408 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 30543 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 249464 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00002852 lncRNA downstream 656173 34857368 ~ 34859323 (+) False XLOC_000414
TCONS_00002853 lncRNA downstream 656173 34857368 ~ 34861057 (+) False XLOC_000414
TCONS_00000682 mRNA upstream 246257 33697170 ~ 33722780 (+) False XLOC_000399
TCONS_00000680 mRNA upstream 274242 33668244 ~ 33694795 (+) False XLOC_000398
TCONS_00000679 mRNA upstream 284821 33668236 ~ 33684216 (+) False XLOC_000398
TCONS_00000678 mRNA upstream 305332 33647682 ~ 33663705 (+) True XLOC_000397
TCONS_00000677 mRNA upstream 333733 33634186 ~ 33635304 (+) True XLOC_000396
TCONS_00000690 mRNA downstream 2622 34203817 ~ 34232249 (+) False XLOC_000404
TCONS_00000691 mRNA downstream 2663 34203858 ~ 34233938 (+) False XLOC_000404
TCONS_00000692 mRNA downstream 23165 34224360 ~ 34232238 (+) False XLOC_000404
TCONS_00000693 mRNA downstream 42455 34243650 ~ 34261993 (+) True XLOC_000405
TCONS_00000694 mRNA downstream 94730 34295925 ~ 34297403 (+) True XLOC_000406
TCONS_00000685 other upstream 1764 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000684 other upstream 233903 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000681 other upstream 275133 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000675 other upstream 513805 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000664 other upstream 752954 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000695 other downstream 199045 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000699 other downstream 484250 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000704 other downstream 494319 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000714 other downstream 1293709 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000717 other downstream 1589697 35790892 ~ 35803084 (+) True XLOC_000419

Expression Profile

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