RNA id: TU153514


Basic Information

Item Value
RNA id TU153514
length 1170
lncRNA type read_through
GC content 0.38
exon number 5
gene id G129971
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9600195 ~ 9602532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCTGTAGCAGTTACATCACTGCTTCTTCCTCCTGCTTATTGTGAGGAACCAGTGTGATCTCTCAGACCTCCTCTGCTGACTCCTACATCATGCAGCTCACCTCAAAGACAAAGGGCAAActtataagaagaaaaaaaaagtatagttATATGGTACACTGTGCTGAGTTTAGAAAGAACGCTGGTGATGTGCAGAAAACAATGCCAACATTTCTGAGCACGCTGTTCTGTTTCCAAGttctgataTGTGTGACAATGAAGAGCAAGGCTGAAAGTGTTTTTACTGGAACAGAAGGAGGCAGTGTGGATATCTCCTACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGGGCTCTGACGAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGCTGTTCCTACTGTGTCCACTCATGCTCCAGTCTCAAGAGTGAATCAAAGCCCTGAGGCTACAGAACAACCCGATGCCTCCACAATGATAACAGCTACTGCAGTTCCTACTGAGTCAACTCGTGATCCAGTGTCGAGGCAGAATCAAAGCTCTCACAGTGATACCAAGTACTGCATGTAGGACCTAAATGCCTATTTGCTACACTCCAACTAGTAAACTCCTCATTATGTTTCTGTTAACCTATTAGCAACATCAGTAAAATAATTATTGGATTAATAATTAGATGCAAATTCAATCCTTGTATGGAACATTTAGATCCTTTTCTTGGAAAATTAGGGAGTACACAATAATTTCTTATAAAACGTGCAACATAGATATTTCTTTCATAATACTACTTCATATGAAAAGCCATCATCCAAAAGTCAGACTAAACATTCTTTAGCCCCacatgtttttcctttaatgataGCTCTGTTCTGTTTCTTATTTTCCAATATTGTCTAATCACTTGcatttaaatgatatatttaattGCCTGCTTATGATCAAAGAGGATTCTTGaataagtaaattattaaaaatgaaaatggattaCTCTGTTGATCTTACCTGAAAacctgtgttcatttactgCCAACTGCTTCTAAGGGTTCCGAAATTGTGAGTAAATATTTCTGGATTGGATCTAAGAAAGTGATTGAACTGTGAGAAGCTCCATGGTGAAATGGTGCATTCATcttgaataaaaaacattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153354 lncRNA upstream 104465 9450562 ~ 9495730 (+) True G129849
TU153371 lncRNA upstream 128918 9462088 ~ 9471277 (+) False cebpb
TU153374 lncRNA upstream 128978 9462088 ~ 9471217 (+) False cebpb
TU153355 lncRNA upstream 145786 9453034 ~ 9454409 (+) True G129850
TU153327 lncRNA upstream 262245 9324708 ~ 9337950 (+) True G129831
TU153546 lncRNA downstream 58714 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 69535 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 113124 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 430818 10033350 ~ 10033565 (+) True G130231
TU153848 lncRNA downstream 483029 10085561 ~ 10147134 (+) True G130285
XM_034306479.1 mRNA upstream 585 9594790 ~ 9599610 (+) True LOC113526970
XM_034306481.1 mRNA upstream 585 9594790 ~ 9599610 (+) False LOC113526970
XM_034306483.1 mRNA upstream 585 9594790 ~ 9599610 (+) False LOC113526970
XM_034306484.1 mRNA upstream 585 9594790 ~ 9599610 (+) False LOC113526970
XM_034306482.1 mRNA upstream 585 9594790 ~ 9599610 (+) False LOC113526970
XM_034306488.1 mRNA downstream 8261 9610793 ~ 9614695 (+) False LOC117597803
XM_034306485.1 mRNA downstream 8261 9610793 ~ 9614694 (+) True LOC117597803
XM_034306489.1 mRNA downstream 8261 9610793 ~ 9614694 (+) False LOC117597803
XM_034306486.1 mRNA downstream 8261 9610793 ~ 9614694 (+) False LOC117597803
XM_034306487.1 mRNA downstream 8261 9610793 ~ 9614694 (+) False LOC117597803
TU152708 other upstream 1287539 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1628446 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2169198 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2172638 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2804119 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 755414 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 953986 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1267602 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2019770 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2019778 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile