RNA id: TU153546


Basic Information

Item Value
RNA id TU153546
length 2008
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC113532719
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9660815 ~ 9665693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCAGTTACTCACACTAGCGGCCATCAGCGTGGAGAGATTCCAGACCATCGCTTTCCCCTTTAGCACCGAGAAAAGGAGAGGACGCATTCGGATCTGGATCCTGATTATTTGGACCTTTGCAGTTACAGTCGCTGTGTCTTCTGTGATTCTGTCCATAGATCCTCTGTCCTACTCAACATGCCGCCACTTGGACACACCAAAGAGCTTTGCTTTGCATGCGGACTCTTTTGACGCCTGTGTTTTGATTCCCATCTGGAGCTTATGTGTCATCCTGATAGCAGTGAACTACTTGCGCATCTTCGTGGTTGTGAAACAGCATTCTAATAAGATCTATGACtcgggagtgtgtgtgctgacgcGCGTGTCGAGCTGCCGGCTGCCCCAGGCCAGTGCACTAGAGCCGGGCAGAGCTGAGGGGAAGTATCCGTGCTCGGGCCCTGAGATCGTGGGCGCTGTTTGTGTTCTCACCCCTAAAGCCAGAGCGCTGGGCAAGGCGAGGGTAGAGGGGAGGTTAGCCAGGAGGCTCGGCTACATCATCGCCGCTGTGGTCGTGTTCTGGCTGCCGCTGGTTCTGCTGCTGCCCCTCAGACTGCTGCTGAAGTGTAGCGCGTGCTGTagtTGGTTAATGTGGGAGCTGGAGACCTCGGCGATGGTATTGACGTGTGTACCTGCTGCTGTGGACCCGCTCATATACACGCTGCTCCATCGCCACTTCTGCACCGAGTTCCGCAAACTCTTCTGCACCAATCAGAGCTGCTGATAGCTGATCGACCAATCAGGAGCCGGCTCTGTGATGAAGATAGGGCCCTGTTTCATCCATATCCAGTAACATCTACTAGGATAAGAGAGTTTTAGTAGTCTGGTCTTGAAATAGAAATTTATGGTTAGAAGGCAAAGCTGCTATAGTAAATATGAGGGGAGCCCAAAACTTCCTggaattgttaaataaaatagtgtTATACGACTTACAGGATTTCTCCTTTAATCTTCTTCAAAGTACTCTCCTTGTGATGCGATACACTTGTCCTAGCGTTTCTCCCATTCCTGGAAACATTTCCTGTAGTCATCTTTTCTCATCGTGTCTAGAGCCtcctgcgtttttttttcttctggattTCTTCCACAGTGGCAACTCTTTTCCCCTTCagtctcatttttaattttgggAACAAAAAGAAATTGCAAGGAGCGAGATCTGGTGAATACGTTGGATGTGAAGCGATAACCACATTGTTTCTGGTTAAAAACTCCTTGGTTGACAAcacagtgtgtgcagatgcaagATCCAGTTCTGGGTGCACCACTCCTCTGGACGGTTTTTTTCTGATGCTTTCCCGTAGATGCCTAAGCACTTCCATGTAAAATCGCTTATGCAAACACACCAAGTGTGTACGCCACATTTGAAATCCGGGAATTTTTGGGCCCCCCTTGTATACCAGTTTTTGAATCTTTTTCACGTTTTCAATAATGGCAGATGCAAATCAAAATTCACAGATGATAGTTTCTCTCTGAGAGAGCATTCAGGGATTTGCACAAGATCACATCATTAAAACCATCTTATTTATAATACCTCCACTTGACATAGACTGGGGGCTCACCAGCTCAACTTAGAGGTGCTTCTCTGAAATTGTGCCTCATAACTaacaaatgacattttattggACGTTTTGTGGCAATTGTTTAAGTTAGCTAACTTTATTTAAGGGATAAACCTGAAATCCTGTTTAGAAACGTAGAGATTCATGTATGCTCATGTGTACAGATTCATTAGATGATTTTAAGCTATTCTGGTAAGATAAGTCACAACTCTGTAAACTCTGTAGCTCTATTAAGATTCTGTGTTTGAGACCAGAAGGTAACGAGGTCAAATCCCACACCAGCAGACGGGCCACTGTTGAGCCCTTGGATTGTGCTTCACTTGTACATGCCGTTGGATGAAAGTGCCTggtgaattaataaatataaatgcacaaaCAGCACCAAacactatttattatttgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153514 lncRNA upstream 58714 9600195 ~ 9602532 (+) True G129971
TU153354 lncRNA upstream 165516 9450562 ~ 9495730 (+) True G129849
TU153371 lncRNA upstream 189969 9462088 ~ 9471277 (+) False cebpb
TU153374 lncRNA upstream 190029 9462088 ~ 9471217 (+) False cebpb
TU153355 lncRNA upstream 206837 9453034 ~ 9454409 (+) True G129850
TU153547 lncRNA downstream 7382 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 50971 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 368665 10033350 ~ 10033565 (+) True G130231
TU153848 lncRNA downstream 420876 10085561 ~ 10147134 (+) True G130285
TU154002 lncRNA downstream 854755 10519440 ~ 10524699 (+) True G130415
XM_026914347.2 mRNA upstream 2687 9651871 ~ 9658559 (+) True ddx20
XM_026913306.2 mRNA upstream 24223 9624300 ~ 9637023 (+) True rap1aa
XM_034306494.1 mRNA upstream 40290 9615604 ~ 9620956 (+) True LOC117597805
XM_034306488.1 mRNA upstream 46551 9610793 ~ 9614695 (+) False LOC117597803
XM_034306485.1 mRNA upstream 46552 9610793 ~ 9614694 (+) True LOC117597803
XM_026922828.2 mRNA downstream 269607 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026919256.2 mRNA downstream 348655 10013340 ~ 10031188 (+) True wnt2bb
XM_026927465.2 mRNA downstream 391544 10056229 ~ 10077521 (+) True mov10b.2
XM_026923227.2 mRNA downstream 503700 10168385 ~ 10279934 (+) True si:ch211-254n4.3
XM_034306371.1 mRNA downstream 549760 10214445 ~ 10279934 (+) False si:ch211-254n4.3
TU152708 other upstream 1348590 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1689497 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2230249 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2233689 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2865170 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 693261 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 891833 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1205449 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 1957617 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 1957625 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile