Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU153848 |
| length | 439 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G130285 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 10085561 ~ 10147134 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU153789 | lncRNA | upstream | 51996 | 10033350 ~ 10033565 (+) | True | G130231 |
| TU153572 | lncRNA | upstream | 369693 | 9715656 ~ 9715868 (+) | True | G130021 |
| TU153547 | lncRNA | upstream | 413226 | 9672067 ~ 9672335 (+) | True | G129996 |
| TU153546 | lncRNA | upstream | 420876 | 9661246 ~ 9664685 (+) | False | LOC113532719 |
| TU153514 | lncRNA | upstream | 483029 | 9600195 ~ 9602532 (+) | True | G129971 |
| TU154002 | lncRNA | downstream | 372306 | 10519440 ~ 10524699 (+) | True | G130415 |
| TU153999 | lncRNA | downstream | 399845 | 10546979 ~ 10549067 (+) | True | G130412 |
| TU154034 | lncRNA | downstream | 535995 | 10683129 ~ 10693414 (+) | False | tmem51a |
| TU154035 | lncRNA | downstream | 548700 | 10695834 ~ 10696020 (+) | False | tmem51a |
| TU153994 | lncRNA | downstream | 592551 | 10739685 ~ 10741404 (+) | False | abl2 |
| XM_026927465.2 | mRNA | upstream | 8040 | 10056229 ~ 10077521 (+) | True | mov10b.2 |
| XM_026919256.2 | mRNA | upstream | 54373 | 10013340 ~ 10031188 (+) | True | wnt2bb |
| XM_026922828.2 | mRNA | upstream | 120465 | 9934292 ~ 9965096 (+) | True | cttnbp2nlb |
| XM_026924266.2 | mRNA | upstream | 419868 | 9660815 ~ 9665693 (+) | True | LOC113532719 |
| XM_026914347.2 | mRNA | upstream | 427002 | 9651871 ~ 9658559 (+) | True | ddx20 |
| XM_026923227.2 | mRNA | downstream | 21251 | 10168385 ~ 10279934 (+) | True | si:ch211-254n4.3 |
| XM_034306371.1 | mRNA | downstream | 67311 | 10214445 ~ 10279934 (+) | False | si:ch211-254n4.3 |
| XM_026918623.2 | mRNA | downstream | 366305 | 10513439 ~ 10541772 (+) | True | slc16a1b |
| XM_034306548.1 | mRNA | downstream | 366305 | 10513439 ~ 10541772 (+) | False | slc16a1b |
| XM_026918615.2 | mRNA | downstream | 366307 | 10513441 ~ 10541772 (+) | False | slc16a1b |
| TU152708 | other | upstream | 1772905 | 8307164 ~ 8312656 (+) | True | G129247 |
| TU152202 | other | upstream | 2113812 | 7968235 ~ 7971749 (+) | True | LOC113526371 |
| TU151932 | other | upstream | 2654564 | 7424023 ~ 7430997 (+) | True | mrps36 |
| TU151927 | other | upstream | 2658004 | 7424023 ~ 7427557 (+) | False | mrps36 |
| XR_004578571.1 | other | upstream | 3289485 | 6756763 ~ 6796076 (+) | False | phf19 |
| TU153960 | other | downstream | 210812 | 10357946 ~ 10358315 (+) | True | G130390 |
| TU153993 | other | downstream | 409384 | 10556518 ~ 10563561 (+) | True | zmynd12 |
| TU154218 | other | downstream | 723000 | 10870134 ~ 10874017 (+) | False | mrpl55 |
| XR_003403321.2 | other | downstream | 1475168 | 11622302 ~ 11633844 (+) | False | LOC113530800 |
| XR_003403311.2 | other | downstream | 1475176 | 11622310 ~ 11633844 (+) | True | LOC113530800 |
