RNA id: XM_026918024.2


Basic Information

Item Value
RNA id XM_026918024.2
length 6718
RNA type mRNA
GC content 0.45
exon number 11
gene id abl2
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10706719 ~ 10741425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCTCACAGTCTTGCTCACACGTGTTTGCGCTGGAGCAGCCACCATGTGTCCGTCGTGGTTTAGCTTTCAAGGAGCTGTCTTGGAAATTCTGAGGTCTGAGCCACATCAAAGACCAGCGTGGAGGCTCAAAAAGCCTCAGTGAAAAGTGGGTTATTTCTTGTCTGAGAGGGGTCTGTGTCTGCAGTGAGCCTCCTGGACCACAGCCTGGCGCGTCAGGCTTCAAACGATCTGTGGATTGCCTTTGGACTTTAATGGGACCATGTACTGGGAGCTGTGGCTGAGTCAGGTGAAGGGGAGAGGAATTCATTACGTGCTTCTCCGAAACAAAGAAGCCCTGCATAGGCCGTTTGGATTGGACTCATCGGCTCTGACTGAGGCGGTGCGTTGGAGCTCAAAGGAGAACCTCCTGGGTGCTGCTGAGAGTGACCCCAACCTGTTTGTCGCACTTTACGACTTTGTGGCCAGTGGTGACAACACGCTGAGCATCACGAAAGgAGAGAAGCTCAGGGTGCTGGGCTACAATCAGAATGGCGAGTGGAGTGAGGTTCGCTCTAAGAACGGTCAAGGCTGGGTTCCCAGTAACTACATCACACCGGTGAACAGTCTGGAGAAGCATAGCTGGTATCATGGACCCGTGTCTCGCAGTGCAGCCGAGTATCTACTCAGTAGCCTCATCAACGGCAGCTTCCTGGTAagggagagtgagagcagcCCGGGCCAGCTCTCTATTTCACTGCGCTACGAGGGCCGAGTCTACCACTACCGCATCAACACTGCCTCTGATGGAAAGGTCTACGTAACCTCTGAGAGCAGGTTCAGCACATTAGCCGAGCTGGTCCATCATCATTCCACTGTAGCAGACGGTTTGGTGACAACGCTGCACTACCCAGCCCCGAAATGCAACAAGCCCACTGTCTACGGGGTCTCGCCCATCCACGACAAGTGGGAGATGGAGCGCACCGATATCACCATGAAGCACAAGCTAGGAGGAGGCCAATATGGCGAGGTCTATGTGGGTGTGTGGAAGAAATACAACCTCACTGTTGCTGTCAAAACACTCAAGGAAGACACTATGGAAGTGGAGGAATTTCTGAAAGAGGCTGCTGTCATGAAAGAGGTGAAACACCCCAATCTAGTGCAGCTGCTTGGTGTGTGCACACTGGAGCCTCCGTTCTACATAGTGACGGAGTACATGCCTCATGGCAATCTGCTGGACTACCTCCGCGAGTGTGACCGTGAGGAGGTGAATGCTGTTGTGCTGCTCTACATGGCTACTCAGATCTCCTCTGCCATGGAATACCTGGAAAAGAAGAACTTTATTCACAGggacCTGGCTGCACGAAACTGTCTAGTAGGGGAGAACCATGTGGTAAAGGTGGCTGATTTTGGCTTGAGTCGGCTGATGACAGGAGACACATACACAGCTCATGCTGGCGCCAAGTTCCCCATCAAGTGGACCGCACCGGAGAGCCTGGCCTACAACACCTTTTCCATCAAATCAGACGTCTGGGCATTTGGAGTGCTTCTTTGGGAGATTGCGACCTATGGTATGTCTCCATACCCTGGTATTGACCTGTCTCAGGTTTATGACCTGCTGGAGAAGGGCTACCGCATGGAACAGCCAGAAGGCTGTCCTCCGAAAGTCTACGAACTCATGAGAGCATgttgGCAGTGGAGCCCACTGGACAGGCCCTCATTTGCAGAGATCCATCAGgcctttgagacaatgttccaTGACTCCAGCATATCAGAAGAAGTGGCAGAAGAACTGTGTAAGACTGCCTCTTGTGGTAAGGGTGGGGTAGTGCACTCGTTCAGTCACGATCAGCCCCTTGTGCCCTCCAAGTCACGGCCGCAGAAGAAGCATTCAGACAATAAGGAGAACATGGAGGGGCTTGAGAGTCGGCATGAGCCTGGATCTCACGGTCCTTCAGCCTCTCTTCTGGTAGGTGATGGTCGTTCCAGCAGCTCTCCTGCTCTGCCCCGGAAGCAGAGAGACAAATCTTCTGGTGGCCTGCTTGATGACTCATTGGATGCCACCTTTACTCGTGACCGCAAAGCTGGCTTCTTCAGCTCCTTCATGAAGAAGAAATCATCAACAACCGCTTCCACCTCTCAGCCTCAGCACAACCTCCCCATGACCCCCAGCAGCTCCTTTCGTGAGATGGAGACACAGCCTCACAAGAAGTATGAGCCCACAACTGCTTTTGGtggtcctcctcctccactgccTCAGACTGATGGCCTTGGCTTCTCTCCGTCTCATGGAGAAAGTAACCATGTTCAGTCACGGTGCTGCGGAGCCACTTTTGGGCAGAAGCTCTCTGGGTCAAACTCTTCCACCTCTAACCAAGTTGGCAGCAGCAGTAGCTGGGCAGGACTTGCAGGCTTCTTCACACCACGCCTTATCAAAAAGACCCTTGGGTTGCGAACTGGGAAGTCTTCTGGGAGTGATGAAGGGGGTGGGGGAGCCAGGCCCTTTCCTCGTTCAAATTCAACGTCCTCCATGTCAGCTGGGCTGCCAGATTTGGAGCGCATGGCGCTAACATTACCCAGGAACCGTAGCAAGCCACCATTGGAACGCACAGTGTCCACCACTTCACAGCCAGAGAATGGTGCCCCGCGACCCTCAGATGCTCTGCCCAGAAAGCTGGATGAGGGCACAGCGCAGATCCGGGACAGACCCAAAGCTAAACTACTGCCACGTGCGGTATCAGTGGGCACAGGAGCGGCTAGGGCACCAGGGGTTGGGGGCGAGGCCGAGTCTGATGCGCATACTCAGGGTAGAGTGGGGCAGGATGACAGAGCAGCCTGGTCTTCTCCGTCTAAAACGTTAGTTGGCCCACACAATCATAAAGTCCCAGTCCTGATCTCTCCGACGTTGAAGTCTGGCACAGCTGATGCACACCTGGTTGGTGTAGACTCACAGGGCAACCGCTTCAAACTGCTGGCCGACAGTGGCAGTGATAGGCCACGACTGATCAAGCCCAAGTGTGCCCCACCTCCTCCACCCACACTGCGCTCTCTCCAACACAGTTATAGCACAGATGGTGCTGACGAGGCGACTAACATGGGCCCAGAGGTCAATGGAGATGGGGTTAAAAGGTCGGGGAGAGGGTCAGGAGGAGCTCGACCATGCATACCGCCACCACAAGCACCTCCAGCACCTGCTGCTTCTTCTGGTAATGCAACAACAAGCAAGATAGCCAATGGTGGCACTACCTCTGCTTCCTCAAAGCTGACGCTGAGACGGACCCGGCAGCAGGTGGAACGTATACCACTGGAAAAAGTCAGTAAAGAAGCTCTGCTGGAGTGTGCTGAGTGCCTGAGCCTTGCGCTCCACAGCAGTACAGAGCCATGCTCCAGCAGCCAAGTCTTGGATGCTGGTCACCAGTTACTCGACTACTGTTCAGGCTATGTAGACTGCATCCCACAAACGCGTAACAAGTTCGCCTTCCGTGAAGCTTTGGGGAAGCTGGAACTCAGCCTCCAGGAACTGCGGGCTTCTTCTACGGGTGGAGGAGGGGGACTAGGTGGAAGTGGGACAAGTCCCGCTTTGGACAACTTGCACTCTTGCATTAAAGAGATCAGCGATGTGGTGCAAAGGTAGTTGGTGGAGTCACATAAAACACCACTACCCTAATAGGACTTTTTACAAGTTTTTAAGTATTGTTTTGTAAATGATTTGGGACAGAGGATATTCTCTCAAAAGTACCTCAGTATAAATCACTACAAATGGTCTCTCCCCCTCTGTCATTGTTTACAGTGGACTTTGAAATCGCCAGTTGGAAACAGAGCTCTAAACTTGTAAATAAGCTTGTTGTCCAAAAGAAATCACGTACAGTGTCTTTTGCCCAGGTTTGGCTACTTATTTTGTGATCAAAAGAGCctacattttaaagtaataGAGACTAATCAATACCCATGACCCAGTCGTTTGACAAATTTATATGATGATTATTACACGGTTTACTTCTACTCATAATAACTGGATGTGTGATTGTGTCTGAATGCACAACAAACCCATCACCATAGAAATAGATCAAGCATGTCCTGGTTGGGCTCTGCACACACTGTTCAATATTAGCAGTACTGAGCCTTCGGCACGAAGGATACACCATGCAGTCACTGTCACCTCTGATTGATTTCATACATCCATGTATAGACATTTCAGCATTTGATGAAAGGTCATGGTTCTGTAGCAGTGTAGGCTAATGCCATTCTCTGTATGTCCATTTTTTGAGGGCATAGTGCTATTTACTTGTGGGAAAGGAGTATGGTCAACACTGAATATAGAGCATCATGTCTGTTCATTAGTGTGTTTTATGTAAGTGACCTTTCAAGATTGTTCTTCAGCGTCAGAATTTATAGCTAATGTCAAATTCAAGATTCCAGTTATTTGTCCACAGAATTTGTCCATAGAATGATTTTGTCAAAACACAGACTTCCAAGCCAACTAAACTCAATGGCGACAATCATAAGATGCATGATAATAATGGCAGATAATTCCAGCTGATATGTAAGTATTTGATAAATATGTGTAGCTGATATTTTTCGATTTTGGAGCAGGAAACATGCTAAAATCTAACAACAGAAAGAGTTCATGGATAAAGGATAGTTTCATATCCAGTAATTATGCCAGAATCTAACAAATTAAATATGTCAATGTTTTACTGGTATTCCTATAGATATGTGAATATTGATTATAGGCTATGACTCAGAATGTTTTCAGAGGTTACAAGCAGGTTTGGCACCTCGACACAACAGCTGAATGTGTTGATTTAGACATGGATGGGCTTTTGTTTGTCAGGATGGGGCACAAGTTTGGACACTGTGGTTTCCCACTGTGACTATAGACACTCACTGCAGAACAGCAACTTTACTGCAATATTGCTAGATATAAGTGACACAGCAAACTGCCATTTCTATAGCACATtgatttgtacttttttttttttttttacattagaaTGTCTTCTAAACttgaattttaaattatttcttattaaaagCACAGGAATTTTtgttatagtaaataaatatttgttcattATGTCCTACAAGAAACATTAAAGACCATCTTTATGTAGCTTTGAGTGGTTGCCTGATCAGAAGGATATTATTCCTTATAGAAAATATTGAAATGAAACGAAGGTCTCCATCTGAGCATCTACAACATGAATGTATTCATCTTGTGAAACGTTGCATGATTTCATACGGCTTGACCAGactccaaaacattaaaatagggtgcaatttcctttttctttccttttatttgaAGCCTTGTAATGTCATTAAAGTGATGATATActttttacactggatgccaTTTTAAAGCATAGATGTTGATGGGCTTGCCTTAAATCATCTATGCGATGTAATATGGAAATGTTATTGTCTGTACCGTTCATCTCAAATTCATTTTGATTCCTCTCAACCAGAACAGAATGTACGTCCTGTGCGTACGTTTAGGGAGCAGTTTTTGGTTTTCATCAGATGACGCTTGGTGGTCTTCTCCACCATAAGCCATTTCCGCAGTTTCATGGTGCCTTTTTGTGAGAGATTTCGTAGTTACGATACAAAAATGCATTGGGAGGATGCAAATGGGGAGCAGTTActcttttaaatgtaaaataatgctTGACTCATCAGTAGATGTGTAATGATGTGCAATGTTTTGTCCTGTAGCAGTGAAAAAGGCAGGGCTTTTAAGACCATTTTAATTTTGCTGATGAGATCATTCATTGGTTATATCTTGCTGGGGTTTCTTCACTCTGACTAAATcctcacacatttttattccttactctgGATAAAAATTTAAAGATAGCTACACTATAAAGAGATGTTCAGATTTATTCAAACAGCAGGAAATCTACTTATTTGACAGTTGCATAGCTTTGGGGAGGAGGTTTTAGAAGAAAGGTTTAAAAGGTTAACCCGAATTCAAGTGATTTTCAGGGAATATTTTTGTGATAGGAGAATTTGAAATGGCAAAGTGCTTATGGTTCATTGTCACTGTTGAATTGCAGATTGATTTAATTTGCCCAGTTAATAACATACAGTAGTGCATCATCGTGCAGTTCATTGGGGTTGCCTTTCTGTAATTTGGCCTTTTGTTTAGTTTGGTATGTTCATTATGTATGTACCGTATGAGTAGGCAACTAGGCAAACCTGTGAAGTGGAGATGCGATTAAACAGAATTTCCTGTTCCTGCTTGCTGGTCTATGTTCAAAgccatcttacacacacacacgtgttttGCGAGTGCATTCAATACAACAGTACAACTTTATTAGCCCTTTTTCactctgcatttttattttgacactgtcttttaatttatttttggttttatttatgtattttctaaGAGATATTGAATCCTGGAAATAACATGTTCTTTTTTATGAAGAGGTTTCGAgttatgtagatttttttttaatgtaaaacttCATTTATATACCAAAGGCCACCTCTGCAGTCCTTCAAGTGCAATGACAAATGGAACACTcttaattttaaatatgtgaattttaaGGGGGATTTAAAAAGGGCAGAGGTTGACAGAATAACAGTATTTTTTCTGTTATGtaaaaagtatattttgtgTGATTCTAATTTAAAGCTCACTTTTAATAGCATATTACTGTGAAGTGCTCCCTCAGTGTTACACttgatgtaaataataattaaaaagggTTGAAGCTTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154035 lncRNA upstream 33050 10695834 ~ 10696020 (+) False tmem51a
TU154034 lncRNA upstream 35656 10683129 ~ 10693414 (+) False tmem51a
TU153999 lncRNA upstream 180003 10546979 ~ 10549067 (+) True G130412
TU154002 lncRNA upstream 204371 10519440 ~ 10524699 (+) True G130415
TU153848 lncRNA upstream 581936 10085561 ~ 10147134 (+) True G130285
TU154050 lncRNA downstream 12375 10753800 ~ 10762869 (+) True G130459
TU154089 lncRNA downstream 120979 10862404 ~ 10862638 (+) True G130492
TU154224 lncRNA downstream 166929 10908354 ~ 10908717 (+) True G130608
TU154225 lncRNA downstream 168468 10909893 ~ 10910207 (+) True G130609
TU154227 lncRNA downstream 169739 10911164 ~ 10911375 (+) True G130611
XM_026934268.2 mRNA upstream 32239 10683078 ~ 10696831 (+) True tmem51a
XM_034306495.1 mRNA upstream 47801 10649962 ~ 10681269 (+) False kazna
XM_026915652.2 mRNA upstream 47803 10636670 ~ 10681267 (+) False kazna
XM_026915636.2 mRNA upstream 47807 10631481 ~ 10681263 (+) True kazna
XM_026918321.2 mRNA downstream 2300 10743725 ~ 10790914 (+) True fnbp1l
XM_026918328.2 mRNA downstream 2300 10743725 ~ 10790914 (+) False fnbp1l
XM_034306370.1 mRNA downstream 128694 10870119 ~ 10874126 (+) False mrpl55
XM_026922991.2 mRNA downstream 128698 10870123 ~ 10874126 (+) False mrpl55
XM_026923001.2 mRNA downstream 128736 10870161 ~ 10874126 (+) True mrpl55
TU153993 other upstream 165509 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 370755 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 2416414 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2757321 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 3298073 7424023 ~ 7430997 (+) True mrps36
TU154218 other downstream 128709 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 880877 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 880885 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 880885 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 880885 11622310 ~ 11633844 (+) False LOC113530800

Expression Profile