Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU154974 |
| length | 387 |
| lncRNA type | sense_over |
| GC content | 0.45 |
| exon number | 3 |
| gene id | foxp3a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 11979186 ~ 11995852 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU154767 | lncRNA | upstream | 263880 | 11716832 ~ 11717885 (+) | True | G131061 |
| TU154744 | lncRNA | upstream | 292091 | 11677903 ~ 11689674 (+) | False | uck2a |
| TU154619 | lncRNA | upstream | 429734 | 11548962 ~ 11552031 (+) | True | G130960 |
| XR_004578615.1 | lncRNA | upstream | 622385 | 11355449 ~ 11359380 (+) | True | LOC117597850 |
| XR_003402857.2 | lncRNA | upstream | 1033419 | 10944657 ~ 10948346 (+) | True | LOC113527270 |
| TU154975 | lncRNA | downstream | 4394 | 11992819 ~ 11993039 (+) | False | foxp3a |
| TU154976 | lncRNA | downstream | 5989 | 11994414 ~ 11994800 (+) | False | foxp3a |
| TU155067 | lncRNA | downstream | 228579 | 12217004 ~ 12217214 (+) | True | G131279 |
| TU155070 | lncRNA | downstream | 237727 | 12226152 ~ 12226362 (+) | True | G131282 |
| TU155063 | lncRNA | downstream | 239789 | 12228214 ~ 12228615 (+) | False | kcnq2a |
| XM_026937381.2 | mRNA | upstream | 24362 | 11947451 ~ 11957403 (+) | True | suv39h1b |
| XM_034306298.1 | mRNA | upstream | 24362 | 11951727 ~ 11957403 (+) | False | suv39h1b |
| XM_026914171.2 | mRNA | upstream | 71761 | 11906748 ~ 11910004 (+) | True | taf10 |
| XM_026914180.2 | mRNA | upstream | 71761 | 11906749 ~ 11910004 (+) | False | taf10 |
| XM_026915550.2 | mRNA | upstream | 77508 | 11882246 ~ 11904257 (+) | True | efhd2 |
| XM_026919551.2 | mRNA | downstream | 7618 | 11996043 ~ 12000770 (+) | True | tspy |
| XM_026916956.2 | mRNA | downstream | 21648 | 12010073 ~ 12033492 (+) | True | sema3ga |
| XM_034306684.1 | mRNA | downstream | 88086 | 12076511 ~ 12096739 (+) | True | stk38a |
| XM_034306685.1 | mRNA | downstream | 88204 | 12076629 ~ 12096739 (+) | False | stk38a |
| XM_026915790.2 | mRNA | downstream | 114795 | 12103220 ~ 12187629 (+) | True | prex1 |
| TU154763 | other | upstream | 271220 | 11709454 ~ 11710545 (+) | False | porcn |
| TU154756 | other | upstream | 272333 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154757 | other | upstream | 272333 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154760 | other | upstream | 273804 | 11705655 ~ 11707961 (+) | False | porcn |
| XR_003403367.2 | other | upstream | 347921 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| trnad-guc_1 | other | downstream | 393574 | 12381999 ~ 12382070 (+) | True | trnad-guc_1 |
| trnav-cac_9 | other | downstream | 1073511 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnaf-gaa_25 | other | downstream | 1075625 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnae-cuc_18 | other | downstream | 1381123 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| TU156117 | other | downstream | 1716831 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
