RNA id: TU154975


Basic Information

Item Value
RNA id TU154975
length 221
lncRNA type sense_over
GC content 0.40
exon number 1
gene id foxp3a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11979186 ~ 11995852 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTATCACTGATGACGCTGATAACCTGTGTACTTATTGCAGTTGGTTGTGGAGAGGCAAAGGCTACAGTCCATGTACCTGCATCTGTTTGATGTAAGTGCTTTTGCTGAAGTAACAATGACATAATGCAGCATACTTTTAAAATGGTTGAGTAGTCTTCATACATTGTCTACAGTCCCCAAACAGTAATTGACCAACATGTCAGTTGACCAACATGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154974 lncRNA upstream 4394 11981765 ~ 11988425 (+) False foxp3a
TU154767 lncRNA upstream 274934 11716832 ~ 11717885 (+) True G131061
TU154744 lncRNA upstream 303145 11677903 ~ 11689674 (+) False uck2a
TU154619 lncRNA upstream 440788 11548962 ~ 11552031 (+) True G130960
XR_004578615.1 lncRNA upstream 633439 11355449 ~ 11359380 (+) True LOC117597850
TU154976 lncRNA downstream 1375 11994414 ~ 11994800 (+) False foxp3a
TU155067 lncRNA downstream 223965 12217004 ~ 12217214 (+) True G131279
TU155070 lncRNA downstream 233113 12226152 ~ 12226362 (+) True G131282
TU155063 lncRNA downstream 235175 12228214 ~ 12228615 (+) False kcnq2a
XR_004578623.1 lncRNA downstream 526855 12519894 ~ 12533258 (+) True LOC117597859
XM_026937381.2 mRNA upstream 35416 11947451 ~ 11957403 (+) True suv39h1b
XM_034306298.1 mRNA upstream 35416 11951727 ~ 11957403 (+) False suv39h1b
XM_026914171.2 mRNA upstream 82815 11906748 ~ 11910004 (+) True taf10
XM_026914180.2 mRNA upstream 82815 11906749 ~ 11910004 (+) False taf10
XM_026915550.2 mRNA upstream 88562 11882246 ~ 11904257 (+) True efhd2
XM_026919551.2 mRNA downstream 3004 11996043 ~ 12000770 (+) True tspy
XM_026916956.2 mRNA downstream 17034 12010073 ~ 12033492 (+) True sema3ga
XM_034306684.1 mRNA downstream 83472 12076511 ~ 12096739 (+) True stk38a
XM_034306685.1 mRNA downstream 83590 12076629 ~ 12096739 (+) False stk38a
XM_026915790.2 mRNA downstream 110181 12103220 ~ 12187629 (+) True prex1
TU154763 other upstream 282274 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 283387 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 283387 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 284858 11705655 ~ 11707961 (+) False porcn
XR_003403367.2 other upstream 358975 11622310 ~ 11633844 (+) False LOC113530800
trnad-guc_1 other downstream 388960 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 1068897 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 1071011 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1376509 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1712217 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile