RNA id: TU155063


Basic Information

Item Value
RNA id TU155063
length 402
lncRNA type sense_over
GC content 0.38
exon number 1
gene id kcnq2a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12196593 ~ 12230001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACACTGCAGCACTATTTTGCATGactcattttcaaaaaaaaaaaagaaagaaagaaagaaaaaaggcaaagtCATCCAGGGACCATTATTGCCTTCCATATAACAGTTTTTCAGTGCATGATTCAGTGCATATTCTTAAACATTCGCatcccttttatttttaatacttaagaCCCTTCAGtattgtttatttgtctttattacaCATTGTACATTTGTGAGGAAGATACACAGTATCTTAGCTCTAGATAGAAGAGATTGTTTCATGAATTGTCAGGGTGGACCAGATAGTGGGGAAGGGAGTATCATCAGGGGATAAGGAGAAACCCAAGAGTGATACTGCTCAGGAAAATGACCCCAGCATGATGGGCCGATTTGTCAAGATGGAGAAACAGGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155070 lncRNA upstream 1852 12226152 ~ 12226362 (+) True G131282
TU155067 lncRNA upstream 11000 12217004 ~ 12217214 (+) True G131279
TU154976 lncRNA upstream 233414 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 235175 11992819 ~ 11993039 (+) False foxp3a
TU154974 lncRNA upstream 239789 11981765 ~ 11988425 (+) False foxp3a
XR_004578623.1 lncRNA downstream 291279 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 291279 12519894 ~ 12533258 (+) False LOC117597859
TU155155 lncRNA downstream 374902 12603517 ~ 12604634 (+) False rbm15
TU155458 lncRNA downstream 461552 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA downstream 472097 12700712 ~ 12701501 (+) True LOC117597872
XM_034306710.1 mRNA upstream 4855 12196593 ~ 12223359 (+) False kcnq2a
XM_034306711.1 mRNA upstream 11838 12196593 ~ 12216376 (+) False kcnq2a
XM_026915790.2 mRNA upstream 40585 12103220 ~ 12187629 (+) True prex1
XM_034306617.1 mRNA upstream 40585 12130355 ~ 12187629 (+) False prex1
XM_034306684.1 mRNA upstream 131475 12076511 ~ 12096739 (+) True stk38a
XM_026928081.2 mRNA downstream 20894 12249509 ~ 12257259 (+) True atp5pb
XM_026916796.2 mRNA downstream 28961 12257576 ~ 12274064 (+) True eps8l3b
XM_034306268.1 mRNA downstream 86289 12314904 ~ 12322876 (+) False gnat2
XM_026926736.2 mRNA downstream 86578 12315193 ~ 12322876 (+) True gnat2
XM_026926743.2 mRNA downstream 88800 12317415 ~ 12322876 (+) False gnat2
TU154763 other upstream 517669 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 518782 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 518782 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 520253 11705655 ~ 11707961 (+) False porcn
XR_003403367.2 other upstream 594370 11622310 ~ 11633844 (+) False LOC113530800
trnad-guc_1 other downstream 153384 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 833321 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 835435 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1140933 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1476641 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile