RNA id: XM_034306710.1


Basic Information

Item Value
RNA id XM_034306710.1
length 2266
RNA type mRNA
GC content 0.51
exon number 13
gene id kcnq2a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12196593 ~ 12230001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCCTTATCGCTTTTGCTACGACTTCATTCATTCGGAAAATAACAAAATCTCTACGAATTGCGCGTGCGATGGGGTTGAAAAGGTAAGTACAGGACGGAACTTAGTCCCAGGCAGGAGAGCAGGAGAGCAGGAGAGCACTGCAGCTTCTGTCCACTGGCTTGTCTCCAGTGGGGGGAAAATCTCCGAACACACACCCATTCGGGCGATGCTCGTTGTCCAGTCTGACAGCGTGTCTCTCTGAGGCTCTGACAATGGCGAAGAAATCAGCCAACGGGGACCTGTCTCGCTCTCCGTCGCAGGAGAAGAAGAAGCCGAAGGTGGGTTTCGTGGGAGTGGATGCCAGCGGCGCGGAGACGAGTCGGGACGGCGTGCTGCTGATCGGCAGCGGAGAGCGCGCGCGCCGGAGCTCCAGCGGCAGGATGGGGCTGTACAGAGCGCGAGCGAGCTTGGGCGGCGCGCGCGGGACTCACCGACGCAGCGCGGGCTACCGGAGACTGCAGAATTTCCTCTACAACGCACTGGAAAGACCGCGAGGCTGGGCGTTCGTCTACCACGCTTACGTCTTTCTGCTGGTGTTCTCCTGCCTTGTCCTCTCTGTGTTTGCTACCATTAAAGAGTTCAAAAACAGCTCAGAGAATGCCTTGTACATTCTGGAAATTGTGACCATCGTGGTGTTTGGTGTGGAATACATAGTGCGGCTCTGGGCTGCCGGCTGCTGCTGTCGCTACAGAGGATGGAGAGGGAGGCTGAAATTCGCTCGCAAGCCCTTCTGTGTTATAGACATCATGGTGCTGTTTGCCTCCGTGTCTGTGCTGGCTGCTGGCTCTCAGGGCAATGTGTTCGCCACCTCAGCCATCCGCAGTCTCCGGTTCCTGCAGATCCTCAGGATGCTGCGCATGGACCGCCGGGCAGGCACATGGAAACTACTGGGATCTGTGGTCTATGCGCATAGCaagGAGCTCATCACTGCATGGTATATAGGCTTCCTCTGTCTCATCCTGGCCTCTTTTCTGGTGTACTCAGTAGAGAAGGATAATAATGCAGAGATGTTTGAGACCTATGCTGATGCTCTCTGGTGGGGGCTGATCACTTTGACCACTATTGGTTATGGGGACAAGTTTCCTGTCACATGGAATGGACGCCTGATTGCCGCAACCTTCAGCTTGATTGGCGTGGCTTTCTTTGCTCTGCCAGCAggTATTCTGGGCTCAGGCTTTGCTCTGAAGGTCCAGGAGCAGCACAGACAGAAGCATTTTGAGAAACGCCGGAACCCTGCTGCAAGCCTTATTCAGGCTGCCTGGAGATTCTATGCAACAAACCTCTCTCGAACAGACCTGCTGTCAACCTGGGATTTTTATGAGCAGACAGTGTCTGTTCCAATGTACAGGCTGATCCCTCCTCTGAATCAGCTGGACCTTTTGCGCAGTCTGAAGGGCAGGTCTGGATTCAGGAAGGACTCACAGCCTGAAGCTTCTCCCAGCCGTAAGCCAAGCTTAAAAGAGAAAGCATTCTCCAGCCCCTCTAAGAGTGCAGGGGGAAAGGAGACCAAATCGCCTGGAGCAGACGAGGGAGCAGCAGAAAGTCCTAGCAAAGTGCCAAAGAGCTGGAGCTTCACTGAGCGAAACCGCTCCAAACACTCCTTGAAGATGAAAGAGGGTCGGACCTCAGAAGAAGCAAGTCTTCCTGAGGACTTTGGCGATGATAGAAACTATGAATTTCTGCAAGATCTGTCTCCTGCACTGAAAGCCACCATAAGGGCAATCTGTATCATGCGGTTCCTGGTGTCTAAGAGGAGGTTTAAAGAGAGCTTGAGGCCGTATGATGTAATGGATGTGATTGAGCAGTATTCAGCAGGCCATCTGGACATGCTGTCTCGCATCAAGAACCTGCAGTCCAGGCAAGACTAATGTCCAACCACAGCTGCATTTACTTTCACATAACAACTGGGTTCATATTTCCAGATTTCCTGTACACATGCTTTTTTTGTACAccacatttcatattttaaattttctgtTGCTATGTCTGTAATCAGGCACAGTGCCCTCTGGTGGGTACATAATATTGTATCTTTGCTACCATTTAAACACTCGCAATGGTAAACTATAGTGGCTCAAAGCTGTCATGCCCATGACACATTCACTCATCTCTGAGCACCCATGCATCCTCAAAAAATTTTATGCAAGAATGGATCAAAGTTTCACTTCTccaattcttttcttttatttttctctcacattcCAAAATTCTGATGTGAGTCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154976 lncRNA upstream 201793 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 203554 11992819 ~ 11993039 (+) False foxp3a
TU154974 lncRNA upstream 208168 11981765 ~ 11988425 (+) False foxp3a
TU154767 lncRNA upstream 478708 11716832 ~ 11717885 (+) True G131061
TU154744 lncRNA upstream 506919 11677903 ~ 11689674 (+) False uck2a
TU155070 lncRNA downstream 2793 12226152 ~ 12226362 (+) True G131282
TU155063 lncRNA downstream 4855 12228214 ~ 12228615 (+) False kcnq2a
XR_004578623.1 lncRNA downstream 296535 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 296535 12519894 ~ 12533258 (+) False LOC117597859
TU155155 lncRNA downstream 380158 12603517 ~ 12604634 (+) False rbm15
XM_026915790.2 mRNA upstream 8964 12103220 ~ 12187629 (+) True prex1
XM_034306617.1 mRNA upstream 8964 12130355 ~ 12187629 (+) False prex1
XM_034306684.1 mRNA upstream 99854 12076511 ~ 12096739 (+) True stk38a
XM_034306685.1 mRNA upstream 99854 12076629 ~ 12096739 (+) False stk38a
XM_026916956.2 mRNA upstream 163101 12010073 ~ 12033492 (+) True sema3ga
XM_026928081.2 mRNA downstream 26150 12249509 ~ 12257259 (+) True atp5pb
XM_026916796.2 mRNA downstream 34217 12257576 ~ 12274064 (+) True eps8l3b
XM_034306268.1 mRNA downstream 91545 12314904 ~ 12322876 (+) False gnat2
XM_026926736.2 mRNA downstream 91834 12315193 ~ 12322876 (+) True gnat2
XM_026926743.2 mRNA downstream 94056 12317415 ~ 12322876 (+) False gnat2
TU154763 other upstream 486048 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 487161 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 487161 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 488632 11705655 ~ 11707961 (+) False porcn
XR_003403367.2 other upstream 562749 11622310 ~ 11633844 (+) False LOC113530800
trnad-guc_1 other downstream 158640 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 838577 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 840691 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1146189 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1481897 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile