RNA id: TU155457


Basic Information

Item Value
RNA id TU155457
length 348
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G131605
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12712625 ~ 12729522 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAGTTATCAAGTATCCTTTAGGTTagagttaaataatttatttaccaGAACATGTTTAGCAATGTTCTGCATACATTTGTGTAAATCTGCAAAAAATGAAGGAAGACAAGCAATACTCACTTCAGCCAGCTCTatgtctgtcatgtttttgattAGATCTCCGGGGAAGGTCACAAAGGTGGATTTAATTGGGAGACACCATGCACTTAAAGTGCAGGCCCCAAGGACCATAAACGCCAAGATACTTGTTCTCATAGTGAGAGCTTTCAGCCACTGATTTGTAGAAAGTCTGAAAGTCTCTGAAGTTGAGTCTTCTTtagtcttcttcttctggctggTTTACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155458 lncRNA upstream 140 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA upstream 11124 12700712 ~ 12701501 (+) True LOC117597872
TU155155 lncRNA upstream 107991 12603517 ~ 12604634 (+) False rbm15
XR_004578623.1 lncRNA upstream 179367 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA upstream 179367 12519894 ~ 12533258 (+) False LOC117597859
XR_004578530.1 lncRNA downstream 79601 12809123 ~ 12809738 (+) True LOC117597782
TU155563 lncRNA downstream 207782 12937304 ~ 12940631 (+) True LOC117597771
XR_004578521.1 lncRNA downstream 209141 12938663 ~ 12941456 (+) False LOC117597771
TU155603 lncRNA downstream 273873 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA downstream 273873 13003395 ~ 13006090 (+) True G131721
XM_026922582.2 mRNA upstream 50480 12659028 ~ 12662145 (+) True LOC113531715
XM_026921593.1 mRNA upstream 57942 12651225 ~ 12654683 (+) True LOC113531099
XM_026927728.2 mRNA upstream 63518 12646689 ~ 12649107 (+) True prok1
XM_034306621.1 mRNA upstream 107920 12599698 ~ 12604705 (+) True rbm15
XM_026926809.2 mRNA upstream 115186 12586799 ~ 12597439 (+) True alx3
XM_026909634.2 mRNA downstream 46404 12775926 ~ 12783157 (+) True adora1b
XM_034307046.1 mRNA downstream 62694 12792216 ~ 12798367 (+) False dclre1b
XM_026911429.2 mRNA downstream 62928 12792450 ~ 12798367 (+) True dclre1b
XM_034307047.1 mRNA downstream 62928 12792450 ~ 12798367 (+) False dclre1b
XM_026928189.2 mRNA downstream 186916 12916438 ~ 12921186 (+) True lhfpl5b
trnad-guc_1 other upstream 330555 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1002080 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1003193 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 332414 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 334528 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 640026 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 975734 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1592650 14322172 ~ 14323450 (+) True G132595

Expression Profile