RNA id: TU155563


Basic Information

Item Value
RNA id TU155563
length 2124
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117597771
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12937304 ~ 12941456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CtgcctttattttctttaataaacaatgcTTATTTGATTATGTTCTCTACAGTTTGATGTAGGAAATAAAGCAGACAGAAGCAGCCACTCCAGTTAATATCACCTCTGCAGTATATAAATATCTCACACTGGTACAATATTGACATTCATTTCATAATTTCTCAAATGACAGCTCAAAAACACAAGAGGACAAACCCCATTCACATCATGCAGTCacatcctctccatctctcttacAGTCTTGCACACAGTGACAGCTCAGAAGGGTGAACACACCATAAAATATACAGATGATGAAAAAGATTACAAGAATAACCTTGTCACTGGTGCCAATAAAGTCTTCCAAATAATGGCAGAGTCACTCTAGTTTCTCCAAGTTAAACTAAAtggcacacattaaaaaaattttgtcAACAAAGTTTTTGGGGAATTATACAGGGGTCTCCCCTGGATTGCCAAATATCTCTAGCAAAGCTTCTAAATGTAAGTTAATGCACATACAATGAACTGTTCAACAAAACGTGAGAGTGTAGCTACATGCATCACAGATCCCAGTACCTTGTTCTAAAATATAATCCTACTAGCagagaataaaatgtaaatattttatatctaaAATGAAACCTTTATCTTATTTAAATCAGTCAGGGGTCTAGCCAGCTAGTTTTATTCTCAGCAAAAGTTATTCAGGAAATGTCAAATAAGACATTGGTGGCAGGAGTATTTTTTCTATTTAGGTAATAACACTATAAATAGCAATAGAAACACTATttcattgaaaaaaatattattcaagcAGATTTTGGTCATATCAATGATACCAAAGTTGTGTTGAGTTTAGATGAAATTCCAACTTAGAAATAAGAACCATACCTTTTCCAGTGTTAATAGATTTTGTAATGCTCAATCCACTGAATTGTAAAGTTGCTGGGTTGGGACATAGTGTAATAAGCATAAAGCTGTGTTGCCAGGTGAGATGTTTTTATGCAAGTGTGTGAgcttaaaaatgttaatatgtcTGTTCATTTGCCTGACAAATGAATGGAAAAATGGCAGGGGGTCAGCACAAACGCAACTCTACTCTACTAGAGGTTCCACTTAAACCTCTCATGAAATGTGTCCCTTTTTCTGTCTTAATATGTTTTGCTCCCTAATTCAGTAGatgccatttttttaatatacaaaacatttttaaaaagactagaacaaagaaaataaagtggCAGGCACTTAAAAATCATACTGTCGGTCTGGTTAGAGAACTGCAAAACATTACAGTGCTAACAAACAAAGTTGAAAGACTGCTGAAGTTCCCGTCCTGTACGGTTCTCACGATTCCATTTCATCCATATCAAATGCAGGTGGCTTGAAACTGATGACTTCCTCATAGGTCAAACCTGTGCAGGGATGAAAAGTGAAGTGTTACGGCCTACGCTGCGTACATCACTGCAATCTGCAGCCATGACTCACGTTTCCACTCTTCAATCTCTAGTTCCCGACTCTCAAAGCTCTGGTCATAGGGCTCTGCTTCTGGTTCATCATCTGGGTCATGATACTGGGCAAAATATGGATGAGCCAAAGCTTCAGCTGCAGTTATTCGCTTATCTGTATCCAAAACCAGCATCTTCTCGAGGAGGTCCACAGCCAGTGGATTGGCCCCAATAAATACATCAGCAAAATTCCTTTTAGGCATCTGTGGCAGGGAATTAATGTAATTCCTGGCCTGCAAAAAGAAAGGGTTTAACTGTAATTTAAGGGTAAGCTTTAGGGACATAAATCGTAGGATTTATGCAAAGATGATCCTGTTTAAGCTATTTATACTTGCAGTCAGACTTTCTAAATAGACCAGATTAGGGCACAAAAAGCTGTATTAAATGTAAGAGAATCTGTAAACAGAGGTGAAAAAAGCAAGGAAAAGACTAGGACGCCTCATTTCAGGGCCAACTTGCTTCCAAACAATTGTCTCATGATTTATAGCATCTGGTTTATTTATGACTTTACAGGATGAAATTTATGATCTCAGACAAAATGATTTGAATGTATGTTAAAATGTGGTAGCATTTTCAACTCAATCTCCATACACCCTCTTAAGGTGTATGACTGGTTGCttgtatgattattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578530.1 lncRNA upstream 127566 12809123 ~ 12809738 (+) True LOC117597782
TU155457 lncRNA upstream 207782 12712625 ~ 12729522 (+) True G131605
TU155458 lncRNA upstream 224819 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA upstream 235803 12700712 ~ 12701501 (+) True LOC117597872
TU155155 lncRNA upstream 332670 12603517 ~ 12604634 (+) False rbm15
TU155603 lncRNA downstream 62764 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA downstream 62764 13003395 ~ 13006090 (+) True G131721
TU155606 lncRNA downstream 62764 13003395 ~ 13006090 (+) False G131721
TU155597 lncRNA downstream 81585 13022216 ~ 13023846 (+) True G131715
TU155870 lncRNA downstream 333504 13274135 ~ 13275095 (+) True G131930
XM_026928189.2 mRNA upstream 16118 12916438 ~ 12921186 (+) True lhfpl5b
XM_034307046.1 mRNA upstream 138937 12792216 ~ 12798367 (+) False dclre1b
XM_026911429.2 mRNA upstream 138937 12792450 ~ 12798367 (+) True dclre1b
XM_034307047.1 mRNA upstream 138937 12792450 ~ 12798367 (+) False dclre1b
XM_026909634.2 mRNA upstream 154147 12775926 ~ 12783157 (+) True adora1b
XM_026947120.2 mRNA downstream 37396 12978027 ~ 12979366 (+) True c8h1orf194
XM_026947202.2 mRNA downstream 37400 12978031 ~ 12979366 (+) False c8h1orf194
XM_026939856.2 mRNA downstream 44796 12985427 ~ 12994779 (+) True inavaa
XM_026926859.2 mRNA downstream 114819 13055450 ~ 13061438 (+) False LOC113534124
XM_026926775.2 mRNA downstream 114857 13055488 ~ 13061438 (+) True LOC113534124
trnad-guc_1 other upstream 555234 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1226759 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1227872 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 121305 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 123419 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 428917 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 764625 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1381541 14322172 ~ 14323450 (+) True G132595

Expression Profile