RNA id: TU155604


Basic Information

Item Value
RNA id TU155604
length 2608
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G131721
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13003395 ~ 13006090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTGGATTACTCCACATTTATTATAGAAAGGTACAGGACAGAATCCCTAATAGAGACGCTGAGGCTTTCCCATGGTGCTCTTAATGTAGAGGGCTCTGACATTCTGCCAGTTCTTCTTCAGGAGAGACACCAGGAAGTTAACAGAGAGATGAATGTTGTAGACCAGCTCATCCTCAGTCATCCTAACATGGCCCACTGCCACAGCCAGACACAGCACCTTTTTTCATCTGGAATTTGATTGTGGATTTGACCTCATCCACCTTGGTATTCAGGTTCTCGTTGTGGGTGAGCAGAGAGGGGAACTTTCCGGCTTTGTTCAGGCCAGGGCCCAGGATACGAGGGATCTGCTTAATCAGGGACTCGGAAGCCAGGAAGGCATCATATTTCTTTGCTGTGGAGCACAGGcaagtgttaattaattaaaccaTGACATCTGCATGTCTATTAAGCTTCTAAATCACACAGGTCTGGTGTTACTACTTCAACATGACACTGATTATTCAGTATTGTGATTGTACAGGACAATACATGTCTGCTATGTACCCACTTGCAACTATTTAGCACTGCATGATTATTTTAACAGCGAGCTCTGCTGAATTCATACTGTGTATGATTGCCACAGTTTAGCAAAACCCGGTTCACCATGCAAAGGCAAAATTCAGAGAAGTTGCTCAACTTGAGTGTGGCCACACCGTACTTAATAGAAATGCCCACCAACCAAACACGAGCAGAGAGGCCATGCAGCAGCTTGTAACCACAAAATGTGCAAGAGGAAAACTACCATAAGACATACTAAGTAGACGTCCCATACTAAGTAGACATTCATATTAGTTTTCAACAATTTTCTAACAATCAAATAAAGGCATTGCTGAACTCAAGAACGTATAGCAAGAAACCACAAGGATGAATGCACAATCCTTTGCCTACATGCTGCTTTTAAGACACATCTCGTGTAAACAGAACAGTGTCCTGGAGAGGTTGTGGTATGCCATATCACTCCTGGTTTAAACAGGTTTTGTTTACAGTCACCCTAATTTACTACTAGTAAATCACTAAATATTTTGGTGAACACCTGTtgtatttatccatttaattatatgcaaacgatatttagaaagaaaataaaattagaaaacgTACCCAGTTTCTTGACCAACTTCTTGTTCTTGTTGAGCTTTTTGAGTGCCTCAATGTCCATGTGTGGGATCTCGGCAGCCTTGGCTTCATCACAATGCTGCTGGTCACCAAGAACGCACACTGAGAACTTGGGACGTGGAGTGGTCTTCAGCCTGTCAAGGACAAAGCGACAAACCCACTGATACCACAAAGAGCAGCAAACTCTCGCAAGTCAAGTGATGCAGAACTGGAGCCTTACCCATACCACGTTGGATGGCGTAGGGTGCCGAAAGCACAGTCATAATTAAATTGTCGGCTTAGGGATGAAAGCACACACAATGCCCAACCCGTCAGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGTCTGCTTTACCAGCCCAGCTCTGGGGTGTAGCAGACTACCCAGGGCACTTCTCCAAGCCTACCACTAGCCTGCCTGAGTAATTCAGCTCAACTTCAGGATGAGCATGATTTTATGAAGATATGTACAGAAATACATGTTATATAACATATTGGCACACTCAGGCAGAGTAGGGTGCAGGCTGAGAGAAGGTTGGGTGAAACAGTAAAGGTCCGAACCTGACAGTGCCTGAGAAACGCTTGTCCTTCTGGGGATCATAGTTCTTCAAGCTGATCTGCAGCTCCACAGTTTCCAGGAACCTGAACAAGTAAGGATGGTTAATATTCATGcaatattcagaaataaatgataatatacAGATTACCCTTACTGCAAGGCATTCatgccatgacacaaagatCAAGTTATTAAACACTGCTGAGGTTGTGCATTGTAATATACTtgtaaaaataacacacacaatgttactgtaaaacaatagaacaatattaaatattaagtataAATATCAGATTCTTACTTTCTCCTCTTGGCAATGGAGCCAGCCTGGACCTCACGAACAGCCTCGTACAACGTATCTCTTGAGACCTTGCTGTAATTAAAACACATGAACGTTTCAATtgtaaaaaaatctacatttcataccgcaggggaaaaaaaacgattCAGATTTTTGTCATTGGTGACTGTTAGAACAACTCCATCAGCGCAATCTATGCTAATTatgctaaaataatattaaacgTAGTCCTCAGCAATCCAATATAGTAACAAAATATATGTTAGAGATATGTAGTATAAAtctaaatatgtatattattcGCTGAAAGTCGGATAATGTCCAGATTTCACTGGATTAAGATTTTGAGCTCTGGTCTAAATTACGATGAGCCGGTAGTTCACTACAGGCGCAGGGTATAAACTGAGTTTTGTAAATTTCTTGAAGCCTCTTTGGCAGCAAAGACAtcaaaatacaacacatttcTATTATTCAGTCTAAACATTTGcgtttaaaaactaaaaatataccAATTAAACAAGTTTTAACACACTTCTTACCGTACCTCATTTTAGCTAGTCTTCCCCTGCCACACGGAGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578521.1 lncRNA upstream 61939 12938663 ~ 12941456 (+) False LOC117597771
TU155563 lncRNA upstream 62764 12937304 ~ 12940631 (+) True LOC117597771
XR_004578530.1 lncRNA upstream 193657 12809123 ~ 12809738 (+) True LOC117597782
TU155457 lncRNA upstream 273873 12712625 ~ 12729522 (+) True G131605
XR_004578634.1 lncRNA upstream 301894 12700712 ~ 12701501 (+) True LOC117597872
TU155597 lncRNA downstream 16126 13022216 ~ 13023846 (+) True G131715
TU155870 lncRNA downstream 268045 13274135 ~ 13275095 (+) True G131930
TU155897 lncRNA downstream 309353 13315443 ~ 13315663 (+) True G131954
TU155899 lncRNA downstream 311208 13317298 ~ 13317506 (+) True G131956
TU155905 lncRNA downstream 319414 13325504 ~ 13325713 (+) True G131962
XM_026939856.2 mRNA upstream 8616 12985427 ~ 12994779 (+) True inavaa
XM_026947120.2 mRNA upstream 24029 12978027 ~ 12979366 (+) True c8h1orf194
XM_026947202.2 mRNA upstream 24029 12978031 ~ 12979366 (+) False c8h1orf194
XM_026928189.2 mRNA upstream 82209 12916438 ~ 12921186 (+) True lhfpl5b
XM_034307047.1 mRNA upstream 205028 12792450 ~ 12798367 (+) False dclre1b
XM_026926859.2 mRNA downstream 49360 13055450 ~ 13061438 (+) False LOC113534124
XM_026926775.2 mRNA downstream 49398 13055488 ~ 13061438 (+) True LOC113534124
XM_034306692.1 mRNA downstream 107616 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA downstream 107616 13113706 ~ 13134629 (+) False slc38a5b
XM_026930223.2 mRNA downstream 130599 13136689 ~ 13145207 (+) True wasb
trnad-guc_1 other upstream 621325 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1292850 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1293963 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 55846 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 57960 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 363458 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 699166 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1316082 14322172 ~ 14323450 (+) True G132595

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069943 False 910 lncRNA 0.50 4 NC_007119.7 23738123 ~ 23740810 (+)
bowfin (Amia calva) AMCG00013897 True 1065 mRNA 0.59 6 CM030125.1 46160628 ~ 46163499 (+)
tiger barb (Puntius tetrazona) TU93661 False 1683 lncRNA 0.44 3 NC_056706.1 11821284 ~ 11823244 (-)