RNA id: TU156120


Basic Information

Item Value
RNA id TU156120
length 4979
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G132138
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13794582 ~ 13799616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACCATTTAAGATCGAATGCATGTTACAGCTTGTGTAAATAGGACCACTGATATGAATCAACAGGTACCAACTGCGCTAACAATATAATAGAAATCTACTTGTAACTAACACACCGACAAATCAATAGAAACTGAAGTAAGAAACACTGATCACATAGATACTATACTGAGCAATGGATATACATCAATATAATCCATAGAATATTTCTGTTAATGTGTGCTATACTTCTCAttaaaatcatgcaaaaatgTTTCACAGTCCAAAAGTCAGAAAAGTCACTCTGTACGCATAGAGTGGATAGGTTGAGAGTGGTCAGAATAATAAGCAAAGCTGTTGTCCTGTTTGTTCAcacaattatttacaaattaacacCTAACTCTTGCTGTGGTTCATCGATCTGTGGGGCATCACTCAGCTGGATAAATACAGATTTGGCCTTTTTTTGGTCTTGTGCTTTAGCTGTTGCAGCTGGTCATGTCTGCTGTAGGTATTAGACAACATGGCTGTACACCCATTCTCAGCACCTTCCATTTAGAGCTGCACAATATACACTcattggccactttaataggaacacctgcacgattatgcagttatccaatcagccagttaggaggcagcagcacagtgcattaaatcatgcagatacaggtcatgtgcttcagttaatgtttacaccaaacatcagaatgggggaaaaaaatttgatttcaTTGACTCAAATAACctctctttacaaccgtggtgagcagaaaagcatctcagaatgcacaggaCATCGGACTTTGAGGCAGAtgggatacaacagcagaagaccacgctGAGTTTCAGTCCTGTcagccaatacaacaatgtgAGTTTACAGTGGACACTGGCTCATCGAaacaggacagttgaagatggttgcctggtcttttttcaaTCTCCAAATGTTcagtttctgctgttgtaacccatctgcctcaagattcagtgtgctgagatgcttttctgctcagtgtggtcgtaaagagtgtttatttgtctCACCTGTCAGCTTTTGGAAGTCTGGCCATTCTGACCATCCatctgacctctttcatcaacaaggcatttccacccacagaacctCTGCTTAGGAGatgtgtttggggtttttttgtttgtttgtttgtttgtttgttttttttttgcaccatcctgtgtaaactctagagactgatgtgtgggaaaatcccagaagatcagcagtttctgaaatactcagaccaggcCATAGTCagtgtcactgagatcacattttttccactttctcaCAATTGCCGTGAACATTAAGCTCTTGTCCTGTATTTGCACAGTATTTTATGCAAATACAGTGCATTTTATGCACTGCTACTACActattggctgattgaataattgcaagAATGAGCAGTTGTAccggtgttcctaataaagtggccagtgagtgtatcaCTCACAGTGTATCGCATTGTTAATATTATCTTTGCCTTTTCTATACTGATATAACAGATGATATCACTGATATCATTGAAATTATCCCTATAATTCCTATTTTATTTGTCTGCTGTGATTATCTTAACCAATATTACCATTCTGTTTGAGTGTGAAGAATCACGGCAACCAATATCATAAATAGTTAATAATTCACACCAGTGTTTCAAGGCTTTAACTATGTCACATTACGGGTTCATCAGTGTTTTTAACATATTGCAAGGTATACCACAGTCACAATATGTAGCAATATAATCTTGTGTATATAATCATATTGTGTAACCTTActctgaatgaacaaaaaaggCGTTGCTCCGTTGTGTCCATGTTACGCTGGTCTTGGTGTTTTCAAGCACATTCACCTTGTCCTAGTTTATAGGGTATAGGCTGTATTTTTTCCAACATGCACCATGCCGATTTAGCACCATGTTGTCTCAGCAACCTCACTGGTTCTCAAATGTAGTCTCTGGCACGAACTGGTatttacttccttttttttctgctatggGTTTTGAGGGTAGTTAAATAACCATTACAGGATTCTATAGTTACAGTATTAAGGAGCTCCaatttgtaattgtttgtaTAATGACACGAAACATGGAGTGAATTTAGATCTTTCTTGCTGTGTGCTTTTCTGTTGTAACTTGGCATTCTCTTGATGGAAACCACAGATATTTGTCAAAACAACAGTCTAGTTACAGAATTTACTTTGTCTTAACAGTTTACGTATGAGGGTATGTAATAGGTAGAATACACACAGGTACTGGTTCTGTGCCTGGGTATTCATTGTGCTGTCATAAAATTTGTGCCGGAGTAACTTTGCCATCCAAAGGTTTGCAAAGTTTGAAAAAGTTATTTTAGAAGCACCTGATGCCATCTTTAGCAGACCAGTGTGCCTAGATTCCAGATTCCCTCATACCATTAAATATGATATGACTAAAATAAGAACCTAATAAACGAATTTTTAGTTGCTACAAGCATTTGTTATAATTTTAAGTTCTCATGGGTAATAAAATTGGCTAAGCAGTTTTCCAGCGTcactatatatgtgtgtagaCGCTACTACATGTTTTGTCACTTTGCAGTTTATTTTGAGGTTGGAGTTGATGCTTAGTGAAATTAGCTTAGAAAGTAGCACCAAGACAGCTCCAGTTAAGACATGCTGTATCATCTGTAACATGCTTAAATAAAGCATATTTTGATAAATGTTTAAGGTGTTGCTGAGGTCTAatatttcctgtgtttttgGTAGTTTCATAAAAGACATGATCCAGACTATTGGCTAAGCATATTCTTAGTCTAAAGGAAGCAAAACATAAGGCTTTACGTTTGATATTATGtaagtaattaaataagtaaaatagcCAGCTAGCTAGATGTTAAAACCAGAGCATCTACATGTTAGGAAAATAAGCACATTTACCCCAAATCAAGGCTTGGTTGAAATCAACACTGGCAGAGCACCAGAGATGTAGTCTAAAAATTGTGCTTGTTACTTTTATGCTGCTTTTATGTAATGGTGATGTGCTACAGAGAATTTTGTGAGATTGTTCAAGCTTTTTCTGTGCTTTTCTCTTAGACAGTAGTGACAGACAGAAGGGGGTTGTAGACTCTTGTCCCATCTGGAGAGCGAGAACCATGAGCCAGGAGCTCTTGGATGGTGATCCAATTGTCCAAGATGCGACGGTTGCGCTTCTTTGAACTCTTCTTTTGGCTTATCTCTAGAATGGAGGTAGCGGCCTGACCTGACTCCTGTTGGCCATCCTTTCCTGGGTCTTGGCCTCGATTACGGAGATAATCTAGTCGACATTGCATCATAAACTCACGTCGTCGACGTTGCTCGCGAGCCCTCAACAACTGTTGCTTTCGCTCCTCTTTGCTCCAGTACCGCCCCATTTTCATTTCACTTacagcatcatcatcagtgGTCATGCCACTACGCTCCTCACAGATCTTCATGGCACGGGCCTTCAGTAGGCGATCACGGACAGGTCGTTTTACTACATAACGTGTGCCATCACTACGGATCTTCACCTTCCACTCCATGCGTGGTGAGGCAGGTGGAAGTGGCAGAGGCAAATCCAAGGAGTGTTTTACTGGGCTGGTGTGAAGCATGGGGCTAAGAGTGCTGTTTGCTAAACTCATAGGGCTTGCCCGGCCACTACTGCCAACTGGAGCCTCACTCTCCCCTTCCACAGTTCTATCCATAGTGCTCTCTGTGAATGAGGAGCCTAGCTGCATGCAGCTCTGGTAGCGCTCAGGCTTAGGTCGGTTAGAGTGATGTCGTCGGGTAAAGTAAGGACTAGATTCAGCACTACGGCCACCAGTTCTTTCATGAATGCTGTTGGCTCTCGAGCTCCTGCCCTGTGTGTCACCATCCGCTAATGAACGAGTGGTCCCCTCCCGAGACAGAGAGTGGAACTTCTGGTTGATATTGGTGTTCATGTGGAACTTCTTGTAGCTATTGGGTGAATAACTGAGTGTGCCACGACCCCTCTCACTCCACAACAGGAGAGAGGTGATCACTCACCAAAGGTGTGCTCCTGCAGCTTTCTCCTCCAGTGTTGTAAGCACTGCTGGTGTCCTTGTCTGATCGCTCTCTCTCAGGGAGTTCTTTGATATCTGACAGCTCATGGTGTGAGGAGCCCTGTAGGTCAGTAGACCCCCTTGCTGAAGCCTCCTCCTCCAGCAGCCATGCCTTCAGGCAGCGCTCTCGTAGCTGCTGCATCTTCTGTGCACGAAGAATGTTCCGACACTTGAATTCAAGGTGCCGTAGCTCCTCCTCCAAGAGTGCCATCTCATGTGGAGTCAGGCTCTCATTAGAGTTTTCATCCAAAGATACCTCTTTgtcttcttcctcctcatcctccccTTCTCCTTCcctcttccttctttcctcAGCGCTTTTCCCTGCATTGCCATTCTTCATATTTCTTTCATAACGACATTTGATCTCTAGCAACTCTCGGTACCTCTCACACTCCTCTTCAGTCAGGCCGGGCATCATCATGGCACTCACTGGATCATGGATGTATCCTCCCCCTGCGCCACCACAATCCAGAGAGTCTGTGCTGAAGTGGAGTTCTCTGATATGGAGTAATGGTGATGGAGTATCCCCCCCACCTCCACTGCCCCTGCCAGGCCTGAACTTGCGGAGGCTGTGTGGTGTATTAGTGGTGTTGGTATTGGAGGCACTGGTCTGCTCGTCGCCAAGGAGTATATCATGCTCGGATGATTCCTCATTCTTGGTGCTCTCATCTGTGCGGCCCACGCCACTGTCCAGCTCCTGGCTGTTATTGAGGGTGGTCAGGCTTAGCAAGGGTGTTTCGCTGTGTAGTGGGACCTCATGAATGCCCATCTGGGCTCTTTGCTGCCGATGATGGTATAGATTGGATAAGTGCGAGCTGTTTAGAGTGTCCACACTCATGCCTACTGGTAACTCGAAATCCAGGTCCTCAGGATCCATTTGAGTCTCCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156118 lncRNA upstream 277 13793156 ~ 13794305 (+) True G132136
TU156121 lncRNA upstream 1873 13791862 ~ 13792709 (+) True G132139
TU156119 lncRNA upstream 3303 13790471 ~ 13791279 (+) False LOC113527348
TU156088 lncRNA upstream 223610 13570392 ~ 13570972 (+) True G132115
TU156048 lncRNA upstream 293899 13500389 ~ 13500683 (+) True G132081
TU156341 lncRNA downstream 91594 13891210 ~ 13948808 (+) False dock8
TU156342 lncRNA downstream 188117 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA downstream 210887 14010503 ~ 14013621 (+) True G132357
TU156411 lncRNA downstream 286036 14085652 ~ 14087881 (+) True G132391
TU156373 lncRNA downstream 317359 14116975 ~ 14120415 (+) True G132361
XM_026915078.2 mRNA upstream 3265 13705167 ~ 13791317 (+) True LOC113527348
XM_034306608.1 mRNA upstream 4306 13705166 ~ 13790276 (+) False LOC113527348
XM_026915087.2 mRNA upstream 4306 13756504 ~ 13790276 (+) False LOC113527348
XM_026913655.2 mRNA upstream 105653 13616607 ~ 13688929 (+) False magixa
XM_026913646.2 mRNA upstream 105653 13616608 ~ 13688929 (+) True magixa
XM_026930414.2 mRNA downstream 23482 13823098 ~ 13833297 (+) False porcnl
XM_026930443.2 mRNA downstream 23482 13823098 ~ 13833297 (+) False porcnl
XM_034306245.1 mRNA downstream 23482 13823098 ~ 13833297 (+) False porcnl
XM_026930423.2 mRNA downstream 23734 13823350 ~ 13833297 (+) True porcnl
XM_034306246.1 mRNA downstream 23734 13823350 ~ 13833297 (+) False porcnl
TU156117 other upstream 87032 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 424963 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 730460 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 732574 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1412512 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 522556 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1180217 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2202445 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2202445 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2603132 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile