RNA id: XM_026913293.2


Basic Information

Item Value
RNA id XM_026913293.2
length 6087
RNA type mRNA
GC content 0.50
exon number 46
gene id dock8
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13890404 ~ 13948808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGTGGAGCCGGTGGATGTGGAGGAATTCCTGATGACACAGCTGCGCAGCGGAGATGCCGAGCTCATGCAGGAGCTGGGCGAATTCCCTGATGATGACCTGGAGGTGGATTTAGCGGACAGGGAATGTCGAACTGCCTACCACTCTGTCCCCGAGGAGGGGTGGAACTGGATCCCCATGTGAGAGACTGTGTGCAAAGTTACACTCAGCCTTGGCTAGTGGTCAACAGAAGATGCCAAGGGGATGGATGGAGTGCGTACTCGGAGAGGACAGGCTTTCACAAACTACTTCAGAAGCAAATATTCGAGTCTGACGTCCAACCAGAGAAACAGGAGCAACCGGTGAAGTCTCCGTCTTTGGCAGTGTTATGTGATGACGACAGTGCTCGCAGCACTCTCACCTCCTCTGATTTTGACCTCCGGGGCCTTCAGCCGGACCCTCGTCTTGACAACCTCCTGCAGTTCAGTAACTCTGAGGAGCTTGACCGCTTTAACCTTGAAGCCAGACAGAACAACCGCCATCCTGAACTTTTCGCTCTCTATCCACCTACTGATGAGGAAGATGCAGTGGAAATTCGTCCCATTCCTGACTGTCCAAAGGAGCACATGGGCCTCAGGATGCTAGTGCGATGCCAGGCCATCAAGTTTGAAATTGAGATCGAGCCCATTTTTGCCACCATGGCCTTGTATGAcctgaaagaaaagaagaagATTTCAGAGAACTTCCACTGTGATCTAAACACAGATCAAATGAAAGGCTTACTGCGCTCCCACACCCCTAGTGTTGACATCTCCACACTGGCAAAGGCTGCCATTTTCTCCATCTCCTACCCTTCTCCAGACATCTACCTGGTCATTAAGTTAGAGAAAGTCCTGCAGCAGGGGGACATTGGAGATTGTGCAGAACCATACATAGGAATGAGTGAGAGCACCAAGAACAAAGACAAACTGGAGAAGCTTCGAAGTCAGGCAGAGAACTTCTGTCAGAGGTTGGGTCGGTACAGGATGCCCTTCGCCTTTGGTACAGCCAACATCATGAGTGCGATCAGCACACCCACACTGGATCGTGACATGACCGACTCAGATAGCATCAATGGCAAGAACAATATGGATAAGAAGGCTTACCTGCCCAGACGCAACTCAGAGAGGTTCACCACCCTGGAGGACCAGTCCAACCTGTCCAGCTTCAAACCTGCCATCATAACCATTCAGTCCATTTTCAAACAGGAAGGGGAGCGTCTCAGTGATGAAGACTTATTTAAGTTCCTGGCTGACGTAAAGAGGACGTCCACTATTCAGCGACGGGTCAAGATAATACCAGGCTTTCTGAAGGTAGAGGTGACCCCAGTGCCAGATACAGTGATGCCATGTCTGTCTCCTGAGCTTATCCCCATTAAACCTGTATCAGAGAAAAACCTGCGACCTATCAAAGAATTGCTTGAGTTTCCGTCCAACGATGTCTACGTCCCTCACTGCATATACAGAAACCTGCTGTTTGTGTATCCTCAGAGGCTCAACTTTGGCCATCGAACGTTGACATCTGCCAAGAATATTACCATAAAGATCCAGTTCATGAATGGAGAGGAGCCACTGCCTGTTATATTTGGGAAATCAAGTGGTCCAGAGTTTCTCTCAGAGATCTACACCCCAGTCACCTACCATAACAAATCTCCAGATTTTTATGAAGAGGTGAAGATCCGGCTGCCGGCTCGTCTGACCGAGAGACACCACCTGCTCTTCTCCTTCTTCCACATCAGCTGCCAGCAGAAGCAGAACCAGAGCGGCAGCGTGGAGACTCTCATCGGATACTCATGGTTACCTATGCTCAATAATGAAAGGCTACAGATGGGAGCTTTCTGTTTGCCCATTGTTCTTGAACGTCTTCCTGTGAACTACTTGCTACATTCTCCTGAGAAATTGCCAATCCAGGTTCCACCAGTCAAGTGGATTGATGGTCATAAAGGAATTTTCAGCTTGGAAATTAAGGCTGTGTCTTCAGTTCATACACAGGAGAGTCACCTGGAGCGCTTCTTCACTCTGTGCCATGCTCTGGAGGGGAAGGCTACATTCCCTATCCGCGTAGGGGATGAGAAAGTGCCAGAAAACAAGCTGGAGCATGAGCTAAAGCTCAGCATCATCTCCCTGTCCTCCTCCGAGCTGGAGCCACTTGTACTCTTTCTCCACCTGGTCCTGGACAAGCTGTTCTGCCTCATCATGCAGCCGATGGTCATCGCTGGCCAGACCGCAAATCTGGCACAGATAGCGTTTGAGTCAGTGGTGTCCGTAGTGAACAGCCTTCATAACAGTCAGGAACTGGCCAAGGACCACCAAGGCAGGAACTGTCTCCTAGCAACCTACCTCTACTATGTGTTCCGGTTGCCAGATACTCCGCAGGAAGTCATTAACACAGGTGCATTGGTACAGGAGAGCAGATACAGCACTATGGGCCGAGCCACAGCCACAAGCGTCGGCAGCATGCTGCTCCAATCTCGCGTCCGCTCCAGCAGCAACCCCGATATTCCTGCTCCACAGAGCTCAGAGGACGCTGAGGTGAAGAGCATACTGGTTGAGAAGGGTATGAATCATCCCGGCAGCAGGATGTCCACTTTTATTGATGTTACCAATCGTTATCAAATTTCCGCTAGTAGCACACGGCCCTCAAACAGAAAGCAATTTCATGAAGAGCTGGCTCTTCAAATGGTGGTGAGCACCGGCGTCTGCAGAGAGAACGTGTATAAATACGCCTGGTTCTTCTTTGAGCTGCTGGTGAAAAGTATGGCTCAGCATGTCTCTCAAATGGACAAGCAGGGAGTGTCTCGCAAAAATCGCTTTTCTGACCGCTTCAAGGATGACATCACCACCATCGTCAACGTGGTGACGGCTGAAATTGGCACTATACTGGTGAAACAGCAGAAGGAACAGGAGCAGGCTGAAAAGGTGAACATTAGTCTGGCATTTTTCATTTATGACCTGATGTCTCTCATGGACAGAGGCTTTGTCTTCAACCTGGTTAGGAACTACTGCAACCAGATGTCAGCAAAGAGTGTGTCCATGTCGACTCTGATCACCATGAGGCTGGAGTTTTTGAGAGTGCTCTGCAGTCATGAGCACTACCTGAACCTGAGCCTGTACTTCAGTAGCCCTGCGTCTGCTCCCACGTCCCCTTCCCCGTCTGTCACTTCACAGACCTCGAGTTCATGTAGTTTGCCGGACCAGAAGATTGCAGCCATGTTTGATCTGACTCAGGAGTTCAAACAGCAGCACTATCTGACTGGCCTGCTGCTGACCGAACTCAGTGCGGCTCTCGATATGGAATCAGAAGGAAGTAAGGTGCAGCGCAAGGCCATAAATGCCACATACAGCCTACTGTGTGCTCATGATTTGGACCCTCGGTGCACAAGGTCAGAAGTCAGGACTAAGATTGCTGCTCTTTACCTCCCCCTGGTGGGCATCATCATCGACTCCCTCAACTACCTGGACTTCACAGTTTCTGAATCACGTGGCAACAAGGCCAAATCCAGCGGGCCAGAGGACGACTTTGAAAATGTAACTCCTATCAATCAgtctgttgccatggcaattGCAGGAAACCCGTTCAACACCTTGGCGAGAAACGCACTTGTGTCCATGGCCTCTGTGTCAGGTAGAAGCTGTAGCACGCTCTCTGCAGAGACCAGCCGTAATCTGCTGGTGTGTTTCCTGTGGATCATGAAGAATGCAGACCAGAGCCTGATCCAGCGTTGGATAGTGGACATATCCCCTTCTCAGCTCAGTCGCCTCCTCGAGCTCCTCACTATCTGCACCTCCTGCTTTGACTACAGGgggaaaCAGAGCTCAGATAAAGTGAGTGTGCAGGCCCTGCAGAAGTCTCAACAGGCTAAAGCTCGTCTGGAAGAGGCACTACTGGGAGGCCTGGGAGCGAGGGGAGAGATGATGAAGAGGGTGGGAGctAATGACCGGACTCTGGGCCAGAGAGAGAACCTGCGCTGGAGGAAAGACCTCACACAGTGGCGCCAGACCAACGACAGACAGGACAAatCTAAAGCTGAGTTGGACCAGGAGGCCATAATCAGTGGGAATCTGGCCACTGAGGCCAACCTCATAGTCTTAGACCTGCTGGAGATCATTGTGCAGactGCACCACTAGCAGACTATAAGGATAGTGCGGTTGGTGGAGTTCTGAGGGTTCTGCTGCACTCACTAACATGCAGTCAGAGCACCTGGTATCTATCTCACTGCTTCAGCACAATCCGAGCTCTCATTGTGAAGTTCGGGGACATGTTGTTCGAGGAGGAGGCCGAGCAGTGTGCAGATCTGTGCCAGAAAGTGCTTCAGTACTGCAGCAGCTGTGTGGACAGCAACAGGAGCCAGGCCTGTGCTACACTCTACCTCATCATGAGATACAGCTTTAGTTCCGCCAGCAATTTCTCTAGAGTGAAGATGCAGGTGACCATGTCGTTGGCGTCTCTAGTAGGAAAGTCCTCGGATGTGCATGAGGAGTACCTGCGCCGCTCTTTTCGCACCATTCTAGCCTATGCAGAAGAAGACACAGAGATGCAATCCACACAGCTGCCTTCACAGGTGGATGAACTTCTGAGGAATCTAAACAGCATCCTTTCAGATACAGTCAAAATGAAAGAGTTTCAAGAAGATCCTGAAATGCTAATGGACCTTATGTATAGGATCGCGAAGGGCTACCAGACGTCACCTGATCTGCGCCTGACCTGGCTCCAGAACATGGCAGAGAAGCATAATGGCAGGAAGTGCTTCACTGAGTCAGCAATGTGTCTGGTGCATGCTGCTGCCCTAGTGGCTGAGTACCTCAGCATGCTAGAGGACCACAAGTACCTGCCTGTAGGCAGCGTCACCTTCCAAAACATCTCCCCTAATGTTCTGGAGGAGTCGGCGGTGTCAGATGATATCCTGTCCCCAGATGAGGACGGAGTTTGTTCAGGACGGTACTTCACAGAGAACGGTCTGGTGGGGCTTCTTGAGCAGGCTGCAGAACTCTTTAGCAATGGTGGATTATATGAGGCAGTGAATGAGGTGTATAAGATCATCATTCCCATACTGGAGGCCCACAGAGATTTCCGGAAACTGGCCACCACTCACGACAACCTAAAAAGAGCTTTTGAGAACGTCGTTCAGAAGgGTCCTAAGAGGATGTTTGGGACATATTTCCGCGTGGCATTTTTTGGCTCGAAGTTTGGAGATCTCGATGAGCGAGAGTTCATTTATAAAGAACCAGGAATCACACATCTCCCTGAGATCTCCCACAGACTAGAAAATTTCTACAGACAGTGTTTGGGAGACGGTGTTCTGGAAATGATCAAGGATTCCACACCTGTAGACAGAAACAAACTGAATCCCAACAAGGCATATATTCAGATCACGTTTGTGGAGCCGTACTTTGACGGCTATGAGATGAAAGATCGTATGACCAACTTTGAGAAGAACTTCAACCTGCGCCGGTTCATGTACACCACCCCGTTCACCAAGAGCGGACGGCCTCGAGGAGAGCTGAACGAGCAGTACAAAAGGAAGACCATCCTCACCACACAACACGCTTTCCCTTATGTGAAGACGCGAATCAATGTCATTCAGAAGGAGGAGTTTGACCTCACTCCGATTGAGGTGGCTATCGAAGACATGCAGAACAAAACTCGCGAGCTGGCTATCGCCACACACAAAGAGAAGCCTGACCCCAAGATGCTGCAGATGGTCTTGCAGGGCTCTGTAACAGCTACAGTTAACCAGGGACCATTAGAGGTAGCCCAGGTCTTTTTGAATGAAATCCCAGCAGACCCCAAACTCTACCGTCATCACAACAAACTGCGTCTGTGTTTCAAAGAGTTCATCCTACGGTGTGGCGAGGCAGTCGAGAAGAACAAGCTCCTGATCACACCAGACCAGCGAGAGTATCAGCATGAGCTGAAGAAGAACTACAATAAGCTGAGGGAGAACCTGAGGCCCATGCTGGAGAGGAAGATCCCTGAGCTCTACAAGCCCATCATCAAACCCCGTTTGGAGAACAGGGACTCAATCAAACGACTCAGCTTCCGGCGGATTCCGGAGGACAGTACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156120 lncRNA upstream 106945 13794582 ~ 13799616 (+) True G132138
TU156118 lncRNA upstream 112256 13793156 ~ 13794305 (+) True G132136
TU156121 lncRNA upstream 113852 13791862 ~ 13792709 (+) True G132139
TU156119 lncRNA upstream 115282 13790471 ~ 13791279 (+) False LOC113527348
TU156088 lncRNA upstream 335589 13570392 ~ 13570972 (+) True G132115
TU156342 lncRNA downstream 40763 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA downstream 63533 14010503 ~ 14013621 (+) True G132357
TU156411 lncRNA downstream 138682 14085652 ~ 14087881 (+) True G132391
TU156373 lncRNA downstream 170005 14116975 ~ 14120415 (+) True G132361
TU156430 lncRNA downstream 286058 14233028 ~ 14234254 (+) True G132405
XM_026925627.2 mRNA upstream 20894 13879111 ~ 13885667 (+) False lrif1
XM_026925618.2 mRNA upstream 20894 13879449 ~ 13885667 (+) False lrif1
XM_026925635.2 mRNA upstream 20894 13879662 ~ 13885667 (+) True lrif1
XM_026937501.2 mRNA upstream 28601 13873546 ~ 13877960 (+) True apex2
XM_026928745.2 mRNA upstream 38441 13838338 ~ 13868120 (+) False csde1
XM_026914857.2 mRNA downstream 2967 13949937 ~ 14022687 (+) True aopep
XM_026924980.2 mRNA downstream 207888 14154858 ~ 14171793 (+) True ercc6l2
XM_026925009.2 mRNA downstream 207888 14154858 ~ 14171793 (+) False ercc6l2
XM_026924990.2 mRNA downstream 207888 14154858 ~ 14171793 (+) False ercc6l2
XM_026925000.2 mRNA downstream 208370 14155340 ~ 14171793 (+) False ercc6l2
TU156117 other upstream 199011 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 536942 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 842439 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 844553 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1524491 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 375202 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1032863 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2055091 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2055091 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2455778 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile