RNA id: TU156411


Basic Information

Item Value
RNA id TU156411
length 2150
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G132391
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14085652 ~ 14087881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTAATTTAACACTGGAGTACATTAAGTGTGAGTTATCACACAATAATATGAAAATGGTAAACAATACATTTGTCTTTCAACCaaattaaataggcctacaatgAAGTGTCAGATCTAACACTTCACAAATAATGTTATTAGTGATGATAATTAGACAGTTATTCAATATGCTGGGGATTTATTGCTCGCTTGCGTCAgtcctgaaatggtggaaatgtaTGTtatcctgtcttttttttaggTTCTGGACAATTGAATTGTTTATCGCGATTTTATAAAGTGGTAAATGATGAGTGGGGAAAAATTAATACCTCACAAGCCTAGTTATAATAATCCAGTAAGTTACAATAAACTTtcaaatgtggggaaaaaacaaaggaGTGGAGAACCCTTATGTTCTGTTGACTGGCTGTTCTTGTTGCATCAACTCATCTCTTTTGGTATTACAGACATGGGTCATTGGTCATTTTGACCTCAGCTTAGGTTATTCTGACTTGAACACAACATAAGGGTTTAGATAAGTGAACTGGTTCATACTTGATTCATAATCACAgtttgtgtgtgcctgtgtgtccTTACTTGACTATGAAGTCGAACTCGGATCCTGCCAGCATGAGCACTCCAAGCAGGGTAGAGAAGGCTCCGTCCAGAACAGGGGCAAACATGTGCTCCAGGGCCAGCACCGCCCGCTTATTTCTGTCCCCTATGGCAGTGAGGAAGGCCTGTATGGAGCACTGGGAAGTCAGAACGCAACCAGACCTGCACTtacagtgccctccagaattacACCCTTtttgaaaatgagcaaaatctGATAATAAAAAGAATAGCATATGTACTCtgtgatattttgagctcaaACATACAGAAGAGTATAACAGCAatgagtctcttcctgtaatgtctaacaaggttggagacGTGTATAACAGGATCTTGGTCCACACCTTCAAAACATTTTAAGCTCCTATATATTCTTATGTTAATACATGTGGACTTCCCgcttcaattcagaccacagcTTTTCTTTGACTGAGATAGTCATCGTACAACACTGATTTTGTGattcttttctcatttctgtgttgatATGGAAGTCTGTTTGGCTCAGTGTTTTGTTGAAAGCCAAGTCTGGACCTCCTGGCAGAAGCAACCAGGTTTTGAGCAGAAATATCCTGCtacttagcagaattcatggtgACATTAATCTTTATAAGAGCCCCTGAACTACCAGCCAAAACAAGCCCCAAAGCATCAATGAACCACCAGCACATTTTACAGTGGGGTATCAAGTGCTTTTCCTTGTATGCCATCCCCTTTTGTCATTAAATATGATGGTGTGCATGAgcaaaaagttcaattttagtTTCATCTGATTACAACACACAATACCTGTTGTAGTTTTAATGAAGTTACACTGTGAAGTTCACTGTGAAGTTCAGGTGTTGAGTTTCGTGAGATGCTCTTAAGAAAGGCTTCTTTCTTGCAATGCTTTTAAATAGCTTTCTGTTATGAAAGTGGTGTTTAACAGTTGATTATTAAACTTGACAACCAGAAGACTAAACTGTGCAATTCTAAAACTGTGACCATTTTTGTGTTGaaagttctttggtttttctCATGGtaatggatatatatatacacaccccaggtAAACAGGACATGGTTAAGATAACTGGGGACTGACAtcaaaagagttttttttattatttaaaatattccttagAGGTGTCTTAATTTTTTAGAtgtatttttgagagaaaatactattatttcaAAGGTAGTTCTAATTTTTGTTTGAACAAAGATAAATAGTTTCTCCTATTGTTGAATtattgtgtcatttttattttacacaattatttttgctcatttttatgaagtgtGCCAATAATAAAGGAGAGCACTGCAGACAAAATTTGTGTGTGAATCAGAGAGAGATCCAACCAACTCACCAGGGCCACGTGGACGGTAAATTCCACACCAATGCCCACAGAAGCAATCAGGATGACCACGGGTACAGCGCTAAGCTTGATGCCAATCAGCCCCATCATGCCGAACAGCTCCACCGTCATCAGCGACAACACTAACACCTGGTAAAGATcgaatgtataaaaatgtcattcaaGGTATAAAACTTTATATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156342 lncRNA upstream 63003 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA upstream 72031 14010503 ~ 14013621 (+) True G132357
TU156341 lncRNA upstream 136844 13891210 ~ 13948808 (+) False dock8
TU156120 lncRNA upstream 286036 13794582 ~ 13799616 (+) True G132138
TU156118 lncRNA upstream 291347 13793156 ~ 13794305 (+) True G132136
TU156373 lncRNA downstream 29094 14116975 ~ 14120415 (+) True G132361
TU156430 lncRNA downstream 145147 14233028 ~ 14234254 (+) True G132405
TU156445 lncRNA downstream 157695 14245576 ~ 14246134 (+) True G132420
TU156449 lncRNA downstream 161241 14249122 ~ 14249718 (+) False G132424
TU156452 lncRNA downstream 161241 14249122 ~ 14249815 (+) True G132424
XM_026914857.2 mRNA upstream 62965 13949937 ~ 14022687 (+) True aopep
XM_026913277.2 mRNA upstream 137372 13890404 ~ 13948280 (+) True dock8
XM_026913286.2 mRNA upstream 138682 13902945 ~ 13946970 (+) False dock8
XM_026913293.2 mRNA upstream 138682 13906561 ~ 13946970 (+) False dock8
XM_026925627.2 mRNA upstream 199985 13879111 ~ 13885667 (+) False lrif1
XM_026924980.2 mRNA downstream 66977 14154858 ~ 14171793 (+) True ercc6l2
XM_026925009.2 mRNA downstream 66977 14154858 ~ 14171793 (+) False ercc6l2
XM_026924990.2 mRNA downstream 66977 14154858 ~ 14171793 (+) False ercc6l2
XM_026925000.2 mRNA downstream 67459 14155340 ~ 14171793 (+) False ercc6l2
XM_026925017.2 mRNA downstream 69155 14157036 ~ 14171793 (+) False ercc6l2
TU156117 other upstream 378102 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 716033 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1021530 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1023644 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1703582 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 234291 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 891952 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1914180 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1914180 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2314867 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile