RNA id: XM_034306628.1


Basic Information

Item Value
RNA id XM_034306628.1
length 6923
RNA type mRNA
GC content 0.44
exon number 22
gene id mtmr3
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16580257 ~ 16621766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGAGAGGAAGTGACGGTACGTCGTGGCGTCACGGCTCGAGGCTGGTGGTAGAGACGCGGTGATGACTGTGTAGTGCTGTGACTGAGTTTGCAGATGGATACGAGATTTCAATGTCATAACGCTATGGGAGATGTTCCATCACTGAAGTGTCCAACAGTTTGCCCATTTTGTCTTATCCAGCTGCAGGTCAAGTTGGGGGAGTGACAGTCAAAAGCCAGCAACAGTGATCCATACTCCTTCATCTGGGGTCATGGAGGAGGAAGGCCAGCAAAGTCTGGAGTGTGTCCAGGCCAATCAGATCTTCCCAAGAAGGCCCCCTGTTCTGGAGGAGGAGGCTCTACAGGTGCCCTTCCCAGAGCTGCATGGAGAGTTTACAAAGTATGTGGGGAGAGCGGAGGATGCAGTCATTGCCATGTCCAGCTACCGCCTACACATCAAGTTTAAAGAGTCCATAGTCAATGTTCCCCTGCAGCTAATAGAAAGTGTGGAATGTCGGGACATGTTCCAGCTCCATATCACATGCAAGGACTGCAAGTTCATAAGGTGTCAGTTCTCCACCTTTGAGCAGTGTCAAGAGTGGCTAAAGAGGCTTTCCTTAGTGACACGGCCACCCTCTCAGCTGGAGGAgcttttctcttttgcttttcACGCCTGGTGCATGGACTCCTACAGCAGTGAGAAGGAGCAGCACAATGAGCTCTGCAGGCCGGGAGATCATGTTATCTCGCGGTTTCACGGTGAGGTGGAACGAATGGGCTTTGACACTCAGAATGCGTGGAGGATATCAGGGATCAATGATAAATACAAGCTGTGTTCCAGTTACCCGCAGCTACTTGTTGTGCCAGCCTGGATCACTGATAAGGAGCTGGAGAACGTGGCAGCCTTCCGCTCCTGGAAAAGGTTTCCAGCTGTGGTCTACAGGCACCAGAACACGGGCGCAGTGATAGCGCGCTGCAGCCAGCCAGAGGTGAGCTGGTGGGGCTGGAGGAATGCAGATGACGAGCACCTGGTGCAATCTATTGCCAGAGCATGTACCGTGGACAGCAGCTCACCCAAAACATTCATAAATCGCTCACTCTCCCGTGACTACCAAAATGGGCCCGATCTCTCAAATGTTGACTTTGACTCCTCCATGACAAACAGTTCGGAGGTGGAATCCTTGGCCATTCAACCTCATAAGCTCCTGATTTTGGATGCTAGGTCTTACGCTGCTGCAGTGGCCAACAGAGCCAAAGGAGGAGGCTGTGAGTGTCCAGAATACTACCCTAACTGTGAAGTGCTCTTCATGGGCATGGCTAACATCCATTCCATTCGCAAGAGTTTCCAGTCTCTGCGATTCCTCTGTGCTCAGATGCCTGACCCTGCCAATTCTATAATTctgttcttcacacacacatccacagacACAGGAAATGAAGTGCTGAACAGGCTTGAAATGGTAGAGTACACCAAAGTACACCTTTACTGGTTGTCTGCTCTGGAGAGCACTAAGTGGCTGCAACACTTGTCTCTCCTGCTGAAAGCTGCTTTATTAGTGGTGAACGCTGTGGATCGTGACCACAGGCCTGTGCTAGTGCATTGCTCAGATGGATGGGATCGCACACCACAGATAGTGGCACTGTCCAAACTCTTGTTGGACCCTTATTATCGCACAATAGAGGGTTTTCAAGTCCTGGTAGAGATAGAATGGCTGGACTTTGGTCATAAGTTTGCTGACCGCTGCGGACATGGAGAGAATGCAGAGGACCTGAATGAGCGATGTCCAGTGTTCCTGCAGTGGCTGGACTGTGTGCACCAGCTCCAGCGACAGTTCCCCTGCTCATTTGAGTTCAATGAGGCCTTTTTGGTGAAGCTGGTACAGCACACATACTCGTGTTTGTTTGGCACATTCTTATGTAACAGTGGGAAGGAAAGAGAAGACCAACACATCCAGGAGAGGACCTGCTCTGTGTGGTCTCTGCTGCGCCCAGCTAACCGCTCCTTCAGCAACATGCTCTACTCAGCACACTCAGAGACTGTTTTACACCCTGTGTGCCATGTGCGTAACTTGATGCTGTGGACTGCAGTGTACCTGCCCAGCTCATGTCCCACAACACCCTATGATGAATCCTGTGTCTCCTACTCTCTGTCTGGTGCCAACCCTGAACACCAGCCTTTGGTCAGGAACAGGCGTCCCAAAACCCGATCTTTTGATAACTTGCCCAGTGCATGTGAAGTTGGAAATTCCCTGCCCTCTAACAGACGTTCCAGTGACCCCAGCCTGAATGAGAAGTGGCAAGAGCATCGCAGATCACTGGGACTCAACATAGTGGCAGGACCTGATGGCACCTTGTTACAGGACACAGAGGGGTGGCCAAATGGCCAGTTGGTGTCTGGACTTAACATAGCTACAGTGGATAGGGAGACAGAGGACTGGGAGTGTTCTCAAGATATCAGCTGTGTAAGGTTGCCATTGGGTGAGGGAGTGGAGGCTGAGCTTTCAGTGAACCTGGCAATGGGACAGATAGAGAATATTTTGCAAGAGGCTGCTGCAGACAGCCTCAGAGATGCTAAAGCAGAGCATGCTAACAATCCTGTTATTTCCAGTGGTGCTGAGAATCAAAACAGCACTGATGCTGATTTGACTGTGGTTGAGAAAAATGGTGTTGCCAATGGCTTTGAGGTGCCTCAAGATGTTTATCCTCAAAGTCACAATGTTGAAAGTCCAAATGAGACAAAACTCAATAATGTTCAATATCAAAGTTCAGTGGTGAATGAGAAATCATGTGATtcaatgattcatttacttcaTGCCCCAGATGAAGTGAAAGCCACTGAGAACCAGGAATCAGTCCAGATTGTGGAAGACGTTTTGGACAAATGCACAACAGAGGAGGCCCGAAATTTTCACAGCAGTTTTAATCCTACTTACTCTCCCTCTACTGCCATCAGGATTTTCAGTAATGGCTATGGGGAAGAGGTCAACAAGGAGCACAAAGTTCTCTGTCCAGTTCCAGAAATTACCAGGCCTGTTACAGAGGTGGCTAAGAAGCATCTTTCTGTCCTGGAAAGCTCCACAGAAACCCTCACTGAAGAATTGGGCATCGGATCAGAGACTCTTGTACCCATGGCCATTTCTGCACAGCCCAAAACCGATCCCACATGCCTCAAGCTTAGCCCTGAGTCAGATCCTGTGCCCCAAAGTGCTCCCAGAATGCTAAATGGCACCTGCAAGCAACCATCCCTCAGTGgcttccctctctcttttgcttCTGCTAAACCACTCCACTCTGTGTGTAATAGTGACTCCTCCGACCCTGATCCTTCCACCCCTCAACGGGCTCTTCTGAGTCGCCAGCTCTCTCTGCCCAGCTGTAGCTGCTCTGTTCAACGCTGCACGCATTCTGGCCGCAGCCACCTTGATGACGATGgcctcacactgcacacagatGTTGTGCAGCAGCGCCTGCGCCAAATCGAGGCTGGCCACCAGCTTGAGGTTGAGGCACTCAAGAGGCAGGTGCAAGAGCTGTGGAGCCGGCTGCAGAGCCAACATGCCACCACAACACAGCACTGCCTCAACGGAGACCTGGGAGATGAAATGACCTCAATTACAGACTCAGACTTTAACATGGACCCAAACTGCCTGTCACGCTGCAGCACAGAGCTCTTCTCAGAGACCAGCTGGGAGCAAGTTGACAGACAGGACACTGAGGTGACCCGGTGGTATCCTGATCATCTGGCTGCACAGTGTTATGGCTGTGCGAGAGGATTTTGGCTGGTCACTAGGAAGCATCATTGCAGAAGCAAGGAGTGTGTGGAGGAGGCCTGGAACTGTGGTAATGTGTTTTGCACCAGCTGCTGTGATCAGAAAATTCCTGTGCCAAGTCAGCAGCTGTTTGAGCCAAGCCGTGTGTGTAAGGCATGTTACAACAGCCTGCAGTCCTCTGCTCCTCCTCTGGAGCTGGAGTTTGACAAATCCATCACGGCCAGCTCCAACTAACCACTTCCCAACACGTTGCCTCAACATGTACAGCAGCTGAGGGTAGAAGCTTCTGGACACTTGGGCGTAGCAGTAAGAAACTGCAAATTTTCCCCCCCTTTTTTGCATCTTCCGCATCTGATTGGGAAATATGGCTGTATATGGAGTGGAATGTGCCTGGAGGCAAGGTATCTGAGGATATTTCCGGGAATATTTTAAGCACTTTTGGTGGCACATTCATGTGACTGACTGCTGGTTTGGATAGCTGAGACACGCACAGATGTTTAGTGAACTGCTGGACATATTTCTGACGTCAGGGATTCCCTTGGATTCTGCTGaaaagttgatttatttttgcctTCCCTTGCCCTTGGTATAGAAAGTAAATCCTGCCTAGTTTCAGAGAGGGCTGTCTTGGGGTGGCCAGTTCAATTGGAATCAAATTGAAGgagttttatttgtgttatcATCTCACAAAGACATTATTTTCACTGCTGAGAGTCTATGGTGCTTTTTGAGTGAGACAAGTTTTGGTTCTATTCCTAGCTTTGCTCTACCTGTTCATTTATTGCTGCTCTTTATACATGAAATGTTTTCAACTACCAGAGACTCAGTGGTGCCTCTATAGATTCTTTTTGGTGAGGTCTTGACCAAATATTTTAGCATACCTGGTGTTTATTTGCAGTTCTGTTTTTTGCCCTTTTTCTTAATTTGATCGTTAAGATTTTTGAGGTTACACAACAATCCCTCCCTTGTTTAAAAGACATTTGTCATCATGCAGACTGGAAAACTCAACCTAAACTGACCCTCTGTTTCAGGGCAGCTGCTCTTTTCCAACAGTTACTCTTTTTCTGCCAAGTAATACCAGCTGAAGAGACGTGTAAAGGGCATGTGCATCTATTATGGACATCTCTCTACCTTTGGCTACTTGTGATGAATTGGTGATGCTGTTTTCCCCAGATTGCTGATATTGTCATAGCCTCAGTGATAAGTGAAAACAGATGCTTAATTCTTACAGCATACCCTCTTGTGCTTATTTGCCACTTACCATGTTCACTAATAGTTTTTTGTAACataatgcaaaacaaaataatatataagaaTGAAATATATAGCATTTAAGGAAAAATACATTGTATAGAATTCTTGAATAATAGCTCACAGACTTAGTCACCAGAAATGataattgtgtttttgtggGTTCTGGCTATTTTTGCTCCCCCCCCCACTAAGTCAACAAAATACAAaccaggaggaaaaaaagagaatcaTACAGgggaattttaatttaaaatgctgtCCTTCCCTGAAAAACCTGGCTGGTTTTTAACAAATATTCAttagtgacatttttttggtTGACTTTTATGTCAATTTTGACAATTCACTTGCCACATGAATTATCAGTATTTGTGAGAAGAGGTAAGTGGTGATGCTATATGACCTGCCTGTGCACTGAGTGACTCCCCCAACATACACACCCAatataatttacacattttcacatggcAACATTTACACCTCTTCTTTGGTCATTCACACAATTAGGATGTGATTATTGTGTTTTCTTCATTATGcataatgttttttcttcagttttccAAGGTAAATGAAGCTTAAAATAAATCAGCTAGTCAAACCAGTTCAGAACAAATAAACTTTGTTCCGAGTAGCTGGGGTCATTTGACATGTGAATGACTTAATATTAACATCAATCCATGAATGTGaaatttgtttttcaaaaaGAGAAAGTTCCTAGGTTTATTTTCTTGCACAATGATAACTTTGAAATAGACTCTCAAAGTTACATGACaataaatttaaacataaaacaccAGCCcttattttcagcttttttatttcagcagtttATTGATTGTTGTATGACAAtctttgtaatgtttaatgtcattcatgtttaaaaaaaaaaaaaataaaaacatcaatatgtataaatatataacaatccATATTAAGTGGATTCATGGGATGGCATTTCCCAAACTGAGAACAGTAGTAAGCATGCGTATGATGTGCACACACTGTTATcttctataaatattttaaaaagggcTTTAGTGTAGCTGTGCTGGTTAGCTTGCACAATAAGGAAGCAGTAATATGTCTTTTACAAACCCTGAGGGCTACTGGACGTTATTTCACTATACAACATACAGGACATCTTTACTCTAAGCAGCAAAAATTTCCAGAACAGCCCAGTAGACATCTTGTAGTCAGCAGTGTCAATAAAAGGaaatactgtttatactgtttcAACAAAAATTGCTATACAATTACTGCAACAGCACAAGGACACTTGTAGCAAGATGATGACTGGTCTCTTATTCCAAATATAATATATGCATTAGGCATGCACtgatattagttttttttttttttaatcatgatcaTTGCTTAAACTTTTAGTATGGTCTACAATTCTTCAATATTATGActtaagaaattaatatttaccTGTATCTCTCTCATTGGGCAGCAttttaaccaaaatgaaacCTTGCCAGCCATAAATACTCTGCCTGGAGTGTTATATAGCATGATTTAAATTAATTGAAAATGAACACTGCCTATCAAATGTTTGGAACATCTtatttaaagctgcagtttggAGAAGAATCAGACAGTTCTGTCTGTAGTGTAAAAACCTGCCTGGTCACCCATTCAAGCTGCATTGGGATGATTTGGACTAAAAAGTGTACAAGCAGGTCCACAAACTTCTGGGGAGTCCTTCAAGAAGCACAGCAGCGCATCCATGAGGAATGCCTGAAAAAAGGGCTAAGTTTTGAATTAAGAAAGTGTTTGCAGCATTTAGAGCTGCTTAATGAGGGTTTTTGCTGGTATGTCTTGGCTTTTTAGTTGTCACAAATATTTGTGATTATTGTCTTCTAAAAAATAAGACTGGCTTGttgcaaacaaaaaataaataaataaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158165 lncRNA upstream 139902 16439266 ~ 16440523 (+) True G133890
TU158107 lncRNA upstream 218176 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 407892 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 408925 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 409828 16164686 ~ 16170597 (+) True G133721
XR_004578591.1 lncRNA downstream 21724 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 21724 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 21724 16643490 ~ 16663314 (+) False LOC117597830
XR_004578593.1 lncRNA downstream 21724 16643490 ~ 16663314 (+) False LOC117597830
TU158518 lncRNA downstream 238220 16859986 ~ 16862952 (+) False gucd1
XM_034306837.1 mRNA upstream 1736 16460559 ~ 16578689 (+) False cux2b
XM_026910736.2 mRNA downstream 94367 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA downstream 94367 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA downstream 94367 16716133 ~ 16737984 (+) False bicdl1
XM_026910769.2 mRNA downstream 238210 16859976 ~ 16867175 (+) False gucd1
XM_034306615.1 mRNA downstream 416055 17037821 ~ 17050280 (+) True LOC113524948
XR_004578524.1 other upstream 160916 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU157866 other upstream 561642 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 568821 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1600521 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2256975 14322172 ~ 14323450 (+) True G132595
XR_003402556.2 other downstream 94367 16716133 ~ 16735335 (+) False bicdl1
TU158711 other downstream 674345 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1409209 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1814444 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2865721 19487487 ~ 19502643 (+) True G135287

Expression Profile