RNA id: TU159097


Basic Information

Item Value
RNA id TU159097
length 283
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G134655
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18121879 ~ 18122161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attttaacaggggtgtgtagactttttatatctactgtatatacaggCAGAGATTTTGAGGTCATCTGCAAAGTTTGGGGCCTGGTTATGTATAAGTGGCAGAGCTAAGTTCAGAACTTTCTCAAGAACCACACATCTGATCAAGGTGAAGCTTGGTATGGTACAATAATCATGACTTTTTGCATGGATTTGCACAAAACTTGAAACctacctgtatatatatatggaatatatatggaattggtctcatcagaccataacacattttagcaGATGGTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159020 lncRNA upstream 37400 18074135 ~ 18084479 (+) True G134598
TU159027 lncRNA upstream 82573 18031925 ~ 18039306 (+) True G134604
TU158992 lncRNA upstream 173917 17947331 ~ 17947962 (+) True G134586
TU158963 lncRNA upstream 219974 17901705 ~ 17901905 (+) True G134557
TU158959 lncRNA upstream 224280 17897388 ~ 17897599 (+) True G134553
XR_003403399.2 lncRNA downstream 148335 18270496 ~ 18271764 (+) True LOC113533180
XR_003403400.1 lncRNA downstream 149784 18271945 ~ 18272850 (+) True LOC113533181
XR_003403401.1 lncRNA downstream 150275 18272436 ~ 18272850 (+) False LOC113533181
XR_003403420.2 lncRNA downstream 273700 18395861 ~ 18416432 (+) True LOC113533555
TU159253 lncRNA downstream 314049 18436210 ~ 18444619 (+) False pbx3b
XM_026925786.2 mRNA upstream 3804 18087941 ~ 18118075 (+) True plat
XM_026925794.2 mRNA upstream 73558 18030975 ~ 18048321 (+) False vdac3
XM_026925795.2 mRNA upstream 73558 18030976 ~ 18048321 (+) False vdac3
XM_026925792.2 mRNA upstream 182184 17928424 ~ 17939695 (+) False polb
XM_026925793.2 mRNA upstream 182184 17928821 ~ 17939695 (+) True polb
XM_026925247.2 mRNA downstream 21886 18144047 ~ 18191595 (+) True snrnp200
XM_034306333.1 mRNA downstream 81996 18204157 ~ 18215143 (+) False vsig8b
XM_026925165.2 mRNA downstream 83846 18206007 ~ 18215143 (+) False vsig8b
XM_026925164.2 mRNA downstream 84001 18206162 ~ 18215143 (+) False vsig8b
XM_026925163.2 mRNA downstream 84261 18206422 ~ 18215143 (+) True vsig8b
XR_003403426.2 other upstream 72990 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 824996 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 1386544 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1521294 16580453 ~ 16600585 (+) False mtmr3
TU158256 other upstream 1527476 16580453 ~ 16594403 (+) False mtmr3
TU159255 other downstream 314049 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 1365326 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2100254 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2100254 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 2100254 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile