RNA id: XM_034307039.1


Basic Information

Item Value
RNA id XM_034307039.1
length 1501
RNA type mRNA
GC content 0.52
exon number 11
gene id pbx3b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18436185 ~ 18681932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACGGTGGAAACACGAGGATTGGTTAAAACCGTTTTCTTTCCAATGTTATAAACATGTCCTCTGTTCTCCTAGTCTGCAAGCAAGGCTTGGTAGAAGCGACCATACTTTGCTATAGTCAAGAGAAACGAGGAGCTAGAGCAATTCATTATCAGTTTAGCATCAACCAGTGTAAAACTTCGGAAGCCCATTGATTGTGTTGCGGCGAACTGATGGACGAGCAAGCCCGAATCATGCAGACTCTCGGCGGTGTCACTCTGGCTGGCCACACGGTACAGGGGGGCATGGCAGTTCCGCCTCCACATGGACACGATGGCTCCGACGGGGACGGAAGGAAGCAAGACATCGGcgacattctccatcaaatcATGACCATAACAGACCAAAGTCTGGACGAGGCGCAGGCAAAAAAGCATGGCCTGAACTGCCACAGAATGAAGCCTGCCCTCTTCAGTGTGCTGTGCGAGATCAAGGAGAAAACAGGTCTGAGTATTCGAGGGGCTCAGGAGGAGGACCCTCCCGATCCCCAGCTCATGCGTCTGGACAATATGCTGCTGGCGGAGGGGGTGGCTGGCCCGGAGAAAGGCGGGGGATCAGCCGCTGTGGCAGCAGCTGCAACAGCATCGGGAAGCCCTACTGACAACTCCATTGAACACTCAGACTACCGGGCCAAACTCTCACAAATCAGACAAATCTACCACACAGAACTGGAGAAGTACGAACAGGCATGTAACGAATTCACAACCCATGTGATGAACCTGCTGCGGGAGCAGTCACGTACACGGCCCATCTCACCCAAAGAGATTGAGCGCATGGTCAGCATCATCCATCGCAAGTTCAGTTCCATCCAGATGCAGCTCAAACAAAGCACCTGTGAAGCTGTCATGATCCTGAGGTCTCGCTTCCTTGATGCCAGACGAAAAAGACGTAATTTCAGCAAACAAGCCACAGAGATCTTGAATGAGTACTTCTACTCCCACCTCAGCAACCCCTACCCCAGTGAAGAAGCCAAAGAGGAACTGGCTAAAAAGTGCAGCATTACAGTATCCCAGgGGGTGGGAAGCACCATCACAGTGGCACAGGTATCTAACTGGTTTGGCAACAAGAGGATCCGTTACAAGAAGAACATCGGCAAATTCCAAGAGGAGGCCAATCTGTATGCTGCCAAAACCGCTGTGAACGCAGCGCATGCCGTGGCTGCTGCCGTGCAGAACAGTCAGACCAACTCCCCGACTACACCCAATTCTGGATTCCAGATGAAAGATGAAGAATTTCAGCTGGATTCTGCAGAGAACAAAAACACTCTTTTAACCAGCATGTTTACTGGTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGATCTGGGGGGCAACTCCATGTACAGTCCACATGGCTTAGATACTGACGAGTTGGACAGAGGCCgttttgtcccaggtggtggagggggaggagcaCCCCATGCTGTGCGTCAGCCGGAAGCTCTCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403420.2 lncRNA upstream 19755 18395861 ~ 18416432 (+) True LOC113533555
XR_003403400.1 lncRNA upstream 163337 18271945 ~ 18272850 (+) True LOC113533181
XR_003403401.1 lncRNA upstream 163337 18272436 ~ 18272850 (+) False LOC113533181
XR_003403399.2 lncRNA upstream 164423 18270496 ~ 18271764 (+) True LOC113533180
TU159097 lncRNA upstream 314026 18121879 ~ 18122161 (+) True G134655
TU159581 lncRNA downstream 149747 18733398 ~ 18733630 (+) True G135076
TU159590 lncRNA downstream 228839 18812490 ~ 18812710 (+) True G135085
XR_003403430.2 lncRNA downstream 286766 18870417 ~ 18871905 (+) False LOC113533586
XR_003403429.2 lncRNA downstream 286770 18870421 ~ 18873621 (+) True LOC113533586
TU159598 lncRNA downstream 299717 18883368 ~ 18883781 (+) True G135090
XM_026925166.2 mRNA upstream 138706 18291489 ~ 18297481 (+) True vgll4l
XM_026925112.2 mRNA upstream 160719 18273663 ~ 18275468 (+) True dgcr6
XM_026925657.2 mRNA upstream 177463 18252746 ~ 18258724 (+) True rpl6
XM_026925385.2 mRNA upstream 184483 18241929 ~ 18251704 (+) True acaa2
XM_026925163.2 mRNA upstream 221044 18206422 ~ 18215143 (+) True vsig8b
XM_034306329.1 mRNA downstream 559896 19143547 ~ 19198823 (+) False lmx1bb
XM_026925120.2 mRNA downstream 559896 19143547 ~ 19198823 (+) False lmx1bb
XM_026925119.2 mRNA downstream 562794 19146445 ~ 19200105 (+) True lmx1bb
XM_026925122.2 mRNA downstream 562794 19146445 ~ 19198823 (+) False lmx1bb
XM_034306330.1 mRNA downstream 562795 19146446 ~ 19198823 (+) False lmx1bb
XR_003403426.2 other upstream 387298 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 1139304 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 1700852 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1835602 16580453 ~ 16600585 (+) False mtmr3
TU158256 other upstream 1841784 16580453 ~ 16594403 (+) False mtmr3
TU159806 other downstream 903836 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 1638764 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 1638764 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 1638764 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 1638764 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile