RNA id: TU159590


Basic Information

Item Value
RNA id TU159590
length 221
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G135085
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18812490 ~ 18812710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaacgtTCTCTCTCCAGggggaaaggcgtacagacgcgGCATCCAGTCCTaggggagctggatgagtcagagagaaccagaggggagAGTGCAATGtctcctgagtcgcaaacagatccacctgagcttggccgaacatacgccatatctgctccaccacctcggggtggagcctccattccccgggcatcagcccctgcctcgacagggcgtctgctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159581 lncRNA upstream 78860 18733398 ~ 18733630 (+) True G135076
TU159253 lncRNA upstream 367871 18436210 ~ 18444619 (+) False pbx3b
TU159265 lncRNA upstream 367871 18436210 ~ 18444619 (+) True pbx3b
XR_003403420.2 lncRNA upstream 396058 18395861 ~ 18416432 (+) True LOC113533555
XR_003403400.1 lncRNA upstream 539640 18271945 ~ 18272850 (+) True LOC113533181
XR_003403430.2 lncRNA downstream 57707 18870417 ~ 18871905 (+) False LOC113533586
XR_003403429.2 lncRNA downstream 57711 18870421 ~ 18873621 (+) True LOC113533586
TU159598 lncRNA downstream 70658 18883368 ~ 18883781 (+) True G135090
TU159609 lncRNA downstream 136517 18949227 ~ 18955201 (+) True G135101
TU159675 lncRNA downstream 456624 19269334 ~ 19269668 (+) True G135164
XM_026925843.2 mRNA upstream 130558 18436185 ~ 18681932 (+) False pbx3b
XM_034307036.1 mRNA upstream 130559 18436185 ~ 18681931 (+) False pbx3b
XM_034307037.1 mRNA upstream 130559 18436186 ~ 18681931 (+) False pbx3b
XM_034307038.1 mRNA upstream 130560 18436186 ~ 18681930 (+) False pbx3b
XM_034307039.1 mRNA upstream 228839 18436187 ~ 18583651 (+) False pbx3b
XM_034306329.1 mRNA downstream 330837 19143547 ~ 19198823 (+) False lmx1bb
XM_026925120.2 mRNA downstream 330837 19143547 ~ 19198823 (+) False lmx1bb
XM_026925119.2 mRNA downstream 333735 19146445 ~ 19200105 (+) True lmx1bb
XM_026925122.2 mRNA downstream 333735 19146445 ~ 19198823 (+) False lmx1bb
XM_034306330.1 mRNA downstream 333736 19146446 ~ 19198823 (+) False lmx1bb
TU159255 other upstream 350556 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 763601 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 1515607 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2077155 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2211905 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 674777 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 1409705 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 1409705 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 1409705 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 1409705 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile