RNA id: TU159609


Basic Information

Item Value
RNA id TU159609
length 258
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G135101
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18949227 ~ 18955201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctaccacttcgtggctgagttgctgttgttcccaaactcttccattttgttatgataaagctgacagttgactgtggaatatttaggagcaaggaaatttcacgactggatttgttgcacaggtggcatcctatgacagttccacgctggaattcactgagctcctgagagcggcccattctttcacaaatgtttgtaaaaacagtctgcatgcctaagtgcttgattttatacacctgtggccaggccaagtgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159598 lncRNA upstream 65446 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 75606 18870421 ~ 18873621 (+) True LOC113533586
XR_003403430.2 lncRNA upstream 77322 18870417 ~ 18871905 (+) False LOC113533586
TU159590 lncRNA upstream 136517 18812490 ~ 18812710 (+) True G135085
TU159581 lncRNA upstream 215597 18733398 ~ 18733630 (+) True G135076
TU159675 lncRNA downstream 314133 19269334 ~ 19269668 (+) True G135164
TU159680 lncRNA downstream 366761 19321962 ~ 19323271 (+) True G135169
TU159822 lncRNA downstream 453353 19408554 ~ 19484934 (+) True G135292
TU159824 lncRNA downstream 477431 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA downstream 530697 19485898 ~ 19486457 (+) True G135309
XM_026925843.2 mRNA upstream 267295 18436185 ~ 18681932 (+) False pbx3b
XM_034307036.1 mRNA upstream 267296 18436185 ~ 18681931 (+) False pbx3b
XM_034307037.1 mRNA upstream 267296 18436186 ~ 18681931 (+) False pbx3b
XM_034307038.1 mRNA upstream 267297 18436186 ~ 18681930 (+) False pbx3b
XM_034307039.1 mRNA upstream 365576 18436187 ~ 18583651 (+) False pbx3b
XM_034306329.1 mRNA downstream 188346 19143547 ~ 19198823 (+) False lmx1bb
XM_026925120.2 mRNA downstream 188346 19143547 ~ 19198823 (+) False lmx1bb
XM_026925119.2 mRNA downstream 191244 19146445 ~ 19200105 (+) True lmx1bb
XM_026925122.2 mRNA downstream 191244 19146445 ~ 19198823 (+) False lmx1bb
XM_034306330.1 mRNA downstream 191245 19146446 ~ 19198823 (+) False lmx1bb
TU159255 other upstream 487293 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 900338 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 1652344 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2213892 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2348642 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 532286 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 1267214 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 1267214 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 1267214 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 1267214 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile