RNA id: TU159675


Basic Information

Item Value
RNA id TU159675
length 335
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G135164
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19269334 ~ 19269668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctgccTCATGGGTGTCTGTAAAACACCcacctttttttccatttttactttctgtatCCATGGGATGAGCACAGGGCTTTAGCATTGAGGAAACGCTGGAGATCTTTGAGCTTTTTTCCATGGAAGTATCTCTCTGTAATCCACTATATTAACAACCTCACAAACCCTACTGTGAACCTCAGAAATTCTACTGTTTTATACAATTATGAAGTACATTAAAGCTAGCTGGTGCCAATGCTGTAAAAGTTAACTCGCCATTTCTGAATTTTGTTTCATAGcatgaaataatatatttattcaaattatatattttgctCATAATCAttctgtgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159609 lncRNA upstream 314133 18949227 ~ 18955201 (+) True G135101
TU159598 lncRNA upstream 385553 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 395713 18870421 ~ 18873621 (+) True LOC113533586
XR_003403430.2 lncRNA upstream 397429 18870417 ~ 18871905 (+) False LOC113533586
TU159590 lncRNA upstream 456624 18812490 ~ 18812710 (+) True G135085
TU159680 lncRNA downstream 52294 19321962 ~ 19323271 (+) True G135169
TU159822 lncRNA downstream 138886 19408554 ~ 19484934 (+) True G135292
TU159824 lncRNA downstream 162964 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA downstream 216230 19485898 ~ 19486457 (+) True G135309
TU159873 lncRNA downstream 288566 19558234 ~ 19559272 (+) True G135341
XM_026925056.2 mRNA upstream 4698 19245748 ~ 19264636 (+) True zbtb34
XM_026925119.2 mRNA upstream 69229 19146445 ~ 19200105 (+) True lmx1bb
XM_034306329.1 mRNA upstream 70511 19143547 ~ 19198823 (+) False lmx1bb
XM_026925120.2 mRNA upstream 70511 19143547 ~ 19198823 (+) False lmx1bb
XM_026925122.2 mRNA upstream 70511 19146445 ~ 19198823 (+) False lmx1bb
XM_026925137.2 mRNA downstream 958 19270626 ~ 19389662 (+) True ralgps1
XM_026925139.2 mRNA downstream 958 19270626 ~ 19389662 (+) False ralgps1
XM_026925138.2 mRNA downstream 958 19270626 ~ 19389662 (+) False ralgps1
XM_034306323.1 mRNA downstream 129070 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA downstream 129070 19398738 ~ 19403017 (+) False LOC113533125
TU159255 other upstream 807400 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1220445 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 1972451 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2533999 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2668749 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 217819 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 952747 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 952747 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 952747 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 952747 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile