RNA id: TU159680


Basic Information

Item Value
RNA id TU159680
length 1277
lncRNA type intronic
GC content 0.38
exon number 2
gene id G135169
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19321962 ~ 19323271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTGTGAATGAAAAGAGACAGTATTCTACACTTATTGGTTCTCCATCAAAGCCCTACTGTTCAGCATGGTGATTAGCTTATGCCATtgattaaagaaatattataaaattgcccttgtttgtttgaatgtttactttttactaATCACTATTTACCATATAATCCATGCACTATAACATACAGAAAAATGGAGCAACCAAATGTATGATCTGCAAAATAGAATATCTTAATGCACTATGAGATTTTTAATGTTTCCTTGTACTATTTATAAATATCAAAAACTTATAGGCTAAGGTTAGAATATTACATTCTAGGTCTATGTAGGTGTATGGATAGTGTGGTTCTAGAGATTCAGCCTCTCCTGCTCTATTTCTCACGCATGTGGTTTTTATCAGTAAGCATATGCTTTCCATCAGTGTAAAACTCCTTCTGCCCTTGTACTCTTGTATTTTGTGTTTCCACTATGATCAAGCATGTCTTACAGACCTGATTTATAAGTTGTCCATTGTTAATAATCTGTTTGTGAGCTTTAGCATACATTTACCACCATCTTGTTGCAAGGCTTGAGACTCTTATCCAAGATTGCTTAAGTAAAAGGTTTGTAtgaatttttttccttccttctctgtaataataatgttacataTTCAGGGCATAATTAAGTAATGGCTTGCCATTTGCAATGTGGTGATTTCTGCTTAGCATATGTTCTTCATTGGCCCTCCATTGATTGCAAAGGCTGAACCAACCTCTGGTCCAGATTATCTAAATCAGATTACGTTGCTAGAAGCTGTTGTTCATGATAGATTGACTGAAGTGGTCACAGCATCAGAAAGTAGTCATCGCTAATCAAAGTTCAGATCATTACTTCACTTCACTGGTATGTAGCTGAAAGCAAGTGTAAGCTATGGTTTTGCACTGCCAGCACTAGtcaggtgtgtatgtgattaTTTCAAATTATCCATAATGTACTGGTGCTTACTTAAATAAACTCCCCAAGATACAAGAAGACATAGCCACATTTACTCTCACCTTGTATGTCTCCCAGTTCCTGAAGAAGTTTACCGAGCCATCCATGCGTCTCTGGATGACTGTCCAGCCTCCAGGGTCCTGTTTTTGGTCACACCATACCTGCATCAGCTTGTTGGTATTCTCAGGCTTCACTAGGTACATACCGCTGTTAGTATGGCCATCTTCCAGGGCCTGCAGACAGTCTTTCCAGGGGcctaaggcaaaaaaaaagaagctaaatgactaaataaacCATTTGTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159675 lncRNA upstream 52294 19269334 ~ 19269668 (+) True G135164
TU159609 lncRNA upstream 366761 18949227 ~ 18955201 (+) True G135101
TU159598 lncRNA upstream 438181 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 448341 18870421 ~ 18873621 (+) True LOC113533586
XR_003403430.2 lncRNA upstream 450057 18870417 ~ 18871905 (+) False LOC113533586
TU159822 lncRNA downstream 85283 19408554 ~ 19484934 (+) True G135292
TU159824 lncRNA downstream 109361 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA downstream 162627 19485898 ~ 19486457 (+) True G135309
TU159873 lncRNA downstream 234963 19558234 ~ 19559272 (+) True G135341
TU159898 lncRNA downstream 291604 19614875 ~ 19615657 (+) True G135363
XM_026925056.2 mRNA upstream 57326 19245748 ~ 19264636 (+) True zbtb34
XM_026925119.2 mRNA upstream 121857 19146445 ~ 19200105 (+) True lmx1bb
XM_034306323.1 mRNA downstream 75467 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA downstream 75467 19398738 ~ 19403017 (+) False LOC113533125
XM_034306355.1 mRNA downstream 95479 19418750 ~ 19419938 (+) True LOC117595725
XM_034306343.1 mRNA downstream 160904 19484175 ~ 19489558 (+) True LOC113533274
XM_034306808.1 mRNA downstream 178222 19501493 ~ 19502708 (+) True LOC117597842
TU159255 other upstream 860028 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1273073 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2025079 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2586627 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2721377 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 164216 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 899144 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 899144 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 899144 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 899144 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile