RNA id: TU159822


Basic Information

Item Value
RNA id TU159822
length 203
lncRNA type read_through
GC content 0.41
exon number 2
gene id G135292
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19408554 ~ 19484934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAAAGCTTTTAAAGACTTTGAGGCAGTGGTGAAGGTGTTCAGGCAGTGGTATCCTTCGCTAATACAAAATAGGGATAAGAAAAAGTGTGAGAGCGATGAGATGAACACCAAGCTGGTGCAGGAGTGTGCCAACAATAAACGCAGCTCTATCTCCGCTCAAAAAAACCTGTGAGCAATTTCAACACTACATTAACTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159680 lncRNA upstream 85283 19321962 ~ 19323271 (+) True G135169
TU159675 lncRNA upstream 138886 19269334 ~ 19269668 (+) True G135164
TU159609 lncRNA upstream 453353 18949227 ~ 18955201 (+) True G135101
TU159598 lncRNA upstream 524773 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 534933 18870421 ~ 18873621 (+) True LOC113533586
TU159840 lncRNA downstream 964 19485898 ~ 19486457 (+) True G135309
TU159873 lncRNA downstream 73300 19558234 ~ 19559272 (+) True G135341
TU159898 lncRNA downstream 129941 19614875 ~ 19615657 (+) True G135363
TU159884 lncRNA downstream 134381 19619315 ~ 19627828 (+) True G135352
TU159885 lncRNA downstream 140370 19625304 ~ 19698739 (+) True G135353
XM_034306323.1 mRNA upstream 4509 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA upstream 5537 19398738 ~ 19403017 (+) False LOC113533125
XM_026925137.2 mRNA upstream 18892 19270626 ~ 19389662 (+) True ralgps1
XM_026925139.2 mRNA upstream 18892 19270626 ~ 19389662 (+) False ralgps1
XM_026925138.2 mRNA upstream 18892 19270626 ~ 19389662 (+) False ralgps1
XM_034306808.1 mRNA downstream 16559 19501493 ~ 19502708 (+) True LOC117597842
XM_034306334.1 mRNA downstream 93068 19578002 ~ 19598056 (+) True map3k12
XM_026925147.2 mRNA downstream 186487 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA downstream 187572 19672506 ~ 19682627 (+) False stac3
XM_026925225.2 mRNA downstream 239088 19724022 ~ 19730524 (+) True LOC113533240
TU159255 other upstream 946620 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1359665 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2111671 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2673219 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2807969 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 2553 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 737481 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 737481 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 737481 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 737481 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile