Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU159840 |
| length | 536 |
| lncRNA type | intronic |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G135309 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 19485898 ~ 19486457 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU159822 | lncRNA | upstream | 964 | 19408554 ~ 19484934 (+) | True | G135292 |
| TU159680 | lncRNA | upstream | 162627 | 19321962 ~ 19323271 (+) | True | G135169 |
| TU159675 | lncRNA | upstream | 216230 | 19269334 ~ 19269668 (+) | True | G135164 |
| TU159609 | lncRNA | upstream | 530697 | 18949227 ~ 18955201 (+) | True | G135101 |
| TU159598 | lncRNA | upstream | 602117 | 18883368 ~ 18883781 (+) | True | G135090 |
| TU159873 | lncRNA | downstream | 71777 | 19558234 ~ 19559272 (+) | True | G135341 |
| TU159898 | lncRNA | downstream | 128418 | 19614875 ~ 19615657 (+) | True | G135363 |
| TU159884 | lncRNA | downstream | 132858 | 19619315 ~ 19627828 (+) | True | G135352 |
| TU159885 | lncRNA | downstream | 138847 | 19625304 ~ 19698739 (+) | True | G135353 |
| TU159931 | lncRNA | downstream | 217805 | 19704262 ~ 19704467 (+) | True | G135393 |
| XM_034306355.1 | mRNA | upstream | 65960 | 19418750 ~ 19419938 (+) | True | LOC117595725 |
| XM_034306323.1 | mRNA | upstream | 81853 | 19398738 ~ 19404045 (+) | True | LOC113533125 |
| XM_034306322.1 | mRNA | upstream | 82881 | 19398738 ~ 19403017 (+) | False | LOC113533125 |
| XM_026925139.2 | mRNA | upstream | 96236 | 19270626 ~ 19389662 (+) | False | ralgps1 |
| XM_034306808.1 | mRNA | downstream | 15036 | 19501493 ~ 19502708 (+) | True | LOC117597842 |
| XM_034306334.1 | mRNA | downstream | 91545 | 19578002 ~ 19598056 (+) | True | map3k12 |
| XM_026925147.2 | mRNA | downstream | 184964 | 19671421 ~ 19682627 (+) | True | stac3 |
| XM_026925146.2 | mRNA | downstream | 186049 | 19672506 ~ 19682627 (+) | False | stac3 |
| XM_026925225.2 | mRNA | downstream | 237565 | 19724022 ~ 19730524 (+) | True | LOC113533240 |
| TU159255 | other | upstream | 1023964 | 18436210 ~ 18461934 (+) | False | pbx3b |
| XR_003403426.2 | other | upstream | 1437009 | 18030975 ~ 18048889 (+) | True | vdac3 |
| TU158711 | other | upstream | 2189015 | 17296111 ~ 17296883 (+) | True | G134341 |
| XR_003402556.2 | other | upstream | 2750563 | 16716133 ~ 16735335 (+) | False | bicdl1 |
| TU158261 | other | upstream | 2885313 | 16580453 ~ 16600585 (+) | False | mtmr3 |
| TU159806 | other | downstream | 1030 | 19487487 ~ 19502643 (+) | True | G135287 |
| XR_004578531.1 | other | downstream | 735958 | 20222415 ~ 20442191 (+) | True | LOC113533440 |
| XR_004578533.1 | other | downstream | 735958 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
| XR_004578532.1 | other | downstream | 735958 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
| XR_004578534.1 | other | downstream | 735958 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
