RNA id: TU159873


Basic Information

Item Value
RNA id TU159873
length 998
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G135341
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19558234 ~ 19559272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgattattattattatcatccaAGTCTTAACTAATTACAGCACAACCTTCTGATCTTCCCATGCATGATTGCTTGGCTGCTGTAGTTTTCAGGCCATTATCTTGTGTAAAGTGCTCCATGTGTCTGGAGGTATTTTTGCAAGTCATTGTACTGCTTCTTCTTTAGGCACATTAGTAACAGAGGAGTCAGCCAGGAGTACAGCTCACATTactctttctccacactttacaagatacaatatttcaatatgtGATTAGTCTTCTTAAAATGTTCTGCCTTACTCAACTGCAAAAAGCTTGAAACATGCAACTACTGGTGACCTTTGTAGCCAGAAGCAAAAAAGATGCCATGGCTGAATCATGTTATTAACTGGAGGTGCCATTACATGTGTCAAATGAGTCATTTAAACATCCAACATTGTTCAGTTACATTATTCACTAGATTTAAGATTctacatttgttaaaaaaatatgtgcatCTGTTCAGTGGAGGCTTATCATAGTCCCTTTCTACTGATGGATACAAAGTGTGCATAGCTTCACATGGGCTATAGACAAACAATTTATACCTATAAAGTGACCTATATGGTTGTTTTACATGATACCTGAAGTTAACTGGCGATGAAAATTAAATGCTGATAATTAAAATgatgttaaatgaataaaatgtttgggggaaaaaaaaatctaaaaactgaATTTCTAAGGAAAAATGTGTCACATTCCAATGGAATGAGAAAatctacatttattattttatgcaaaatgaATTGTAATTCTGagtatattttgaaatatgtaAGTATGTAAAGTAAGTAGCACTGATTGAAGCCTAAAAGCACAAAGGGGTTCACGACATTTGTTCGGTGtagagggtgtgtgtattgtaatcTTCTGTCTTGCTGGTGAAGTGGGGAAGTGGAGGGCTTCCAGTTGAACATGGCATCCCCACACCAACAAAGTAGAAAGGCACATGAGAGATTCGCCCATTTGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159824 lncRNA upstream 41489 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA upstream 71777 19485898 ~ 19486457 (+) True G135309
TU159822 lncRNA upstream 73300 19408554 ~ 19484934 (+) True G135292
TU159680 lncRNA upstream 234963 19321962 ~ 19323271 (+) True G135169
TU159675 lncRNA upstream 288566 19269334 ~ 19269668 (+) True G135164
TU159898 lncRNA downstream 55603 19614875 ~ 19615657 (+) True G135363
TU159884 lncRNA downstream 60043 19619315 ~ 19627828 (+) True G135352
TU159885 lncRNA downstream 66032 19625304 ~ 19698739 (+) True G135353
TU159931 lncRNA downstream 144990 19704262 ~ 19704467 (+) True G135393
TU160018 lncRNA downstream 157365 19716637 ~ 19716979 (+) True G135466
XM_034306808.1 mRNA upstream 55526 19501493 ~ 19502708 (+) True LOC117597842
XM_034306343.1 mRNA upstream 68676 19484175 ~ 19489558 (+) True LOC113533274
XM_034306355.1 mRNA upstream 138296 19418750 ~ 19419938 (+) True LOC117595725
XM_034306323.1 mRNA upstream 154189 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA upstream 155217 19398738 ~ 19403017 (+) False LOC113533125
XM_034306334.1 mRNA downstream 18730 19578002 ~ 19598056 (+) True map3k12
XM_026925147.2 mRNA downstream 112149 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA downstream 113234 19672506 ~ 19682627 (+) False stac3
XM_026925225.2 mRNA downstream 164750 19724022 ~ 19730524 (+) True LOC113533240
XM_026925227.2 mRNA downstream 164750 19724022 ~ 19730524 (+) False LOC113533240
TU159806 other upstream 55591 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1096300 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1509345 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2261351 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2822899 16716133 ~ 16735335 (+) False bicdl1
XR_004578531.1 other downstream 663143 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 663143 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 663143 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 663143 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 663143 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile