RNA id: TU159898


Basic Information

Item Value
RNA id TU159898
length 695
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G135363
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19614875 ~ 19615657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGCACTACTCAATTATGTTTTACTGCACATGTCTCTTTATACAAGCcaacttactactactactacactatcTGCTTCTATGTGGTCAAAAACTGTGAATCACCAACACATGCACATTATATACATGCTGGTCCATATTCTGGTGATTCTTTTTACATGTAcagtcatgagaaaaagaaaagtacaccctccttcattTCTATGTTTTTAGTCATCAGGgcttaaataacaattgtgtggccctcaccaacttctaaacacacacagataacctcaggtgacaaaatGTAGTCATTTACATATTTCGATgagatgtgagagactgataaactcctacacaAAACATTTACTTGTTGCTAAATGTGGTTctgcatgttactgaattatagggtgcaacccaaaggtgaacctgaaggttgtgggttcgagtctcgggtccggcagggattgtgggtggggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacttggccacaagtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159873 lncRNA upstream 55603 19558234 ~ 19559272 (+) True G135341
TU159824 lncRNA upstream 98130 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA upstream 128418 19485898 ~ 19486457 (+) True G135309
TU159822 lncRNA upstream 129941 19408554 ~ 19484934 (+) True G135292
TU159680 lncRNA upstream 291604 19321962 ~ 19323271 (+) True G135169
TU159884 lncRNA downstream 3658 19619315 ~ 19627828 (+) True G135352
TU159885 lncRNA downstream 9647 19625304 ~ 19698739 (+) True G135353
TU159931 lncRNA downstream 88605 19704262 ~ 19704467 (+) True G135393
TU160018 lncRNA downstream 100980 19716637 ~ 19716979 (+) True G135466
TU160034 lncRNA downstream 228288 19843945 ~ 19902367 (+) False LOC113533656
XM_034306334.1 mRNA upstream 16819 19578002 ~ 19598056 (+) True map3k12
XM_034306808.1 mRNA upstream 112167 19501493 ~ 19502708 (+) True LOC117597842
XM_034306343.1 mRNA upstream 125317 19484175 ~ 19489558 (+) True LOC113533274
XM_034306355.1 mRNA upstream 194937 19418750 ~ 19419938 (+) True LOC117595725
XM_034306323.1 mRNA upstream 210830 19398738 ~ 19404045 (+) True LOC113533125
XM_026925147.2 mRNA downstream 55764 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA downstream 56849 19672506 ~ 19682627 (+) False stac3
XM_026925225.2 mRNA downstream 108365 19724022 ~ 19730524 (+) True LOC113533240
XM_026925227.2 mRNA downstream 108365 19724022 ~ 19730524 (+) False LOC113533240
XM_026925228.2 mRNA downstream 108365 19724022 ~ 19730524 (+) False LOC113533240
TU159806 other upstream 112232 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1152941 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1565986 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2317992 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2879540 16716133 ~ 16735335 (+) False bicdl1
XR_004578531.1 other downstream 606758 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 606758 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 606758 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 606758 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 606758 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile