RNA id: TU161152


Basic Information

Item Value
RNA id TU161152
length 2784
lncRNA type sense_over
GC content 0.41
exon number 4
gene id G136466
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21674858 ~ 21693702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTGACATGTAACTGACGATACACGCGTTACTCTTACACTTCTGCTAATccgaaaaaaagagagagacttaTCTACACAGCCTCGTGTCGTCGTTCTAGTTGGCTACTCCAGCCGTCTATAGGCGCTCATGCTATCATTCACCAGCCTTAAGGCAAAAACTCGCAGTGTTTAAGCTCAACAGCTTCAGGCTCTGTAAGTGTCAGTCTGCTGCTTTCAGGTGATTAATGGAGTCCAAGGGAGCACCGGAAGGCAGAAGCCGGACTGGACACCGACCAGGTCAGTGCACTCCCATGCCTTCTCCACCTTTGGGGACACTTACACTAGTGGCTGGAAATGGGACCAGTGTGGGCACAGTGATGACCTTACTGTGCCCTGTTAAGCATCGTGCCGTCAGTGGTGGCCGAATTTCCTGTGTGCAGGAAACTAACGGCACAGAGTGGACCGGGGGTACCCCTGAGTGTAAACGGAAAGGAAGAGGGAAGCTTCCAGACTTTGGCACCAATTAAATccagaggaacagagagaatCTTTCTACAATCATAATGACAGAATCAaccacaacaacagcaacaacaacacccgcagcagcagcagcagtagacAGGAGAAACATCCAAGGTGTCATCAGAAAAACAACCCTGATCCTCTAACTATCCACCACTCACAGCCTACCCTGGGACAAATGCCCCCACCAATGCTCTGTGTATAACCAGATACATTAGAAGTACCATACAACCACATACGTCACACTTTTCACCTATTCTCTGTGGAGGGATATGACCCTAACTGGAGCAATCACCATAGAACTGAGCTATACCAACAGCATCAAGCACACATGAGGGTGCAAAGACTGGGCAGAAACTGGAGGAGCCACTTTGAAAAGGGAAACACCCACAAGATCCACAAATCTGGGGTGTATCTGTATAAAGCTTGTTCAGCAGCAATGATTGGTGAACCATTAATATACTTAATTTGAATCAACATTGCTGTGTTTTTACAATGAACTTTGGGTCCTTTAGTTTGTAATTGTTGTACCATGTGATGCAAACTTGCAAACtatgataaagaaaaaaatccagggGGAAACATAGCTGCTCTTGTAATCTAAACTAGATTTTAATCATAATCTACACACACCTGGGTATTGTTTTGAGAGGCTTCAAactattacactatatggcacatatgtgcttgttgaacatcctattccaaaggaatggcattaatatggagttggtcccccaTTTGCCGGAGCAGCAAGCctattctgggaaggctttccactagatttttgaaTGTTGCTAGGGGATTTGTGCCCGTTAACCCACAAGAGTATTAGCAGGGTTGGGCACTGTCGGGTAAGGAGGCCTGGTGTggagtcggcattccagttgaGTTGAGTGCTTCCaaatcaaccttggcaaaccatgtctttatggacctcactttgtttTGAGGGGCATTCTCATGCTGGAAtgtgtttgggcctcttagttccagtgaagggaaatcataattcTACAGCGTGCAatgacattctagacaatcgGGTGCCTCCAACTTAGTGAAAAGTttgggaaggctcacatataTGTAggggtcatggtcaggtgtccacatatagtgtagtatggcATTTTACTTTTTGAAAATCATCAATCACTAAAAATATAAGGGTAAGTGAGGTATATTACTATCATTGCAGGTGCAGTAGCCTGATAGATATGACATcttaataataattctttatatatcatatattttaaacaggaagagagaaaaaagtgaaaatgtcagcTACAACAAATAGACTACAGattgatttatatttctttgtGCATAACATCTAGACTAAGGCATAATTTAGAATAGAGTAGAACATGCTCATCTTTGTATATACATCAGCAACATGGTGGAAACTAGTCATTGTAGCCTAATATTATATAccaatactactactgctaataataataataataataataataataataataatgttggtgatgatgatgatttataatagtttttttaaGGGGTGGCAATAATTTTTGAGTGTAATCCATTGCTTGGCCTCCTTTCTAAGCTCTATATGGGACTGGTCGCCCCCAAGACCAAACTGAACACAAAAGACAGATCTGTAAAGACAGATTGTCCAGTGCTGTGGCCCCCAAACTAAAATTTCCTCTGGGATGGTTGTCTATGCCCTATTATAAGACACAGGTGTAGACTTAACTTTTTCTCCTAGACATTTGTTAATTagaatgtactgtacattcTATAGCAAACATGGCATTTAAAACATATGTATCACATAATTAATGTTGGAGAACTGACTTTATGAATCTTGGGTCATTTGGGTTTTTCTGTCATGGGTGCTCTGTGAATGTGGAGGGTCAGAAAAATCATAAACCCTTTGAGCATACTCTTCCAATTTTATATCAGTAGCTAAGCTTTTGCTGCAGTATTCAGTGCTATTTACAACTGTTTGTCCTCATTGCTTTCCCTGTTGCTGACAGTCAGGCAAAGGCAACCGATTCAGTGGAGGTTGGTTTGCTTCAAATTCCACAGATTCACAACTTTATTTAAGCTGCATAGTTTCACCAATTTGCAAAACCAAACAGGAGAGAAAttgtatgtgtattttaaataatattgggAAGTGGCCTATTAAAAATGTGCATTAGCTTCTTAAACATACTAACAACTTTAGCACTCTGACTGATATTGTATTGTAATGCATTGTATTGATATTGGATCATCaagcaaaattaaatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161109 lncRNA upstream 312978 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 327697 21346845 ~ 21347161 (+) True G136429
TU160650 lncRNA upstream 709390 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 709390 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 735788 20937123 ~ 20939070 (+) True G136057
TU161219 lncRNA downstream 109847 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 109847 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 137560 21824989 ~ 21825322 (+) True G136532
TU161246 lncRNA downstream 152203 21839632 ~ 21839852 (+) True G136544
TU161242 lncRNA downstream 155758 21843187 ~ 21859668 (+) False LOC113533434
XM_034306537.1 mRNA upstream 2433 21623985 ~ 21672425 (+) True fgd
XM_026925264.2 mRNA upstream 58775 21567910 ~ 21616083 (+) True LOC113533260
XM_026925443.2 mRNA upstream 112288 21489384 ~ 21562570 (+) True mib2
XM_026925442.2 mRNA upstream 112288 21498208 ~ 21562570 (+) False mib2
XM_026925096.2 mRNA upstream 189901 21481381 ~ 21484957 (+) True ubiad1
XM_034306635.1 mRNA downstream 6605 21694034 ~ 21742561 (+) True LOC113533227
XM_026925406.2 mRNA downstream 56513 21743942 ~ 21766390 (+) True brpf1
XM_026925407.2 mRNA downstream 56513 21743942 ~ 21766390 (+) False brpf1
XM_034306993.1 mRNA downstream 93794 21781223 ~ 21797769 (+) False LOC113533123
XM_034306992.1 mRNA downstream 93795 21781224 ~ 21797769 (+) True LOC113533123
TU160573 other upstream 927002 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 942387 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 1232667 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 695 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 1091 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 2238 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 2596 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 2992 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile