RNA id: TU161753


Basic Information

Item Value
RNA id TU161753
length 1426
lncRNA type read_through
GC content 0.34
exon number 2
gene id LOC113533283
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22092595 ~ 22123751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAGACACAATACTCTCATACTGAACTTCTGTTCATGTCTGTTCTGTTGTACATATCATGCCAACCAATTCAAGAACAAATGGTGCAATCTTTTTGACACTTTCTGCAAATCTGATAGCCAAAAcacttaaaaacacacaccacactgagtAACTTTGGCACTACTTTATCTTATCAATACTATATTTGCCATAGTCAACTGATCCTATAGGACAGGGtaacaaataatacatttgatatctgtaataattttatatgttgATCAgaagcagggttttttttttcaatgtctCATATAGGCTAATACACACACCaaaaaaaatctcatcttggtattatgagaaaaatatttcataattacaGGAAagcatcttattaaaaaaaagagatttctgtttttatagaaTATGtctcataataatgagatgttttctTGTAATAACAACATATTTCCTCATAATGTTTACTTGTAAAACCAGGATGTTTTCTCTTAACTAGACTATTTCCAATTGTAAAAAGATGCTTTTCAAGTAATAAGATGTTTTTTCATAGTAATGAGATGCCTTTCCCAAGCTAAGAAGATGCTGATGATGATTTCTTTTCTTGCATGACAGCAAGACATCTGTGATATCATTGTTGCAAAAGTGAGCATGCCATGATTACCAAATGATATACTGGGAATATATGAGATATATTTTCCCAAGTACTGACAAGGGAATCTGTATTGCTTAAATGAGAGATGGGTAATCAACAGTAGCTGTGTAAGATTTGTAATATGACaaattttatgaacattttatttcgAGATCTACAGTATGTGCCTGCTTTTTTCCCATGAAGAATGTCACTCTAATGCAAAGAACCCCTTCATGTCTGGTGTAACTGCTTTCAGATGTTGTGTACAACATTCATGGGAATGTGCTCCACTGGTTTACGACTTGTTTGAATAATCGCAAGTCATTTGCTGAAACGAACaaattttagtttaattttgaaaagccattttcaccTTTAAATGTTGGAGCTTGTTAGCTGAAAGTGGTGACCCTTTCAGGCATTTCTGATCAATTTATCAACTCCACACTTCGCACATTATTGGGTAATGCAACTAACTTTTGTGGAAACTGTTTTAGCATTGTAACAGCTTTTTGACTTGGTATGCTGCACCTTCTCCAGTCTCTTCTTCAGTGCCGATGTTGGATGTCTGCTTAAATAATTTATCTACACATTAGTTACAAACTGGATATGTTGTCTAACACTAAATCAGTTCTGCACTGACAGATCCATCCTGTACACTTTAGGAGAGAATCACAATACAAAGTTCTTTTAACAGTTgtgcacacatttatttatcatgaaTAGGCAGTATTTCATGTTACCTGACAGAGTACCACTAAAAACACGTCTGCGCAGGGCCAAATGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161242 lncRNA upstream 232927 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 252743 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 267273 21824989 ~ 21825322 (+) True G136532
TU161219 lncRNA upstream 294787 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA upstream 294906 21797276 ~ 21797689 (+) False LOC113533123
TU161800 lncRNA downstream 24872 22148623 ~ 22149777 (+) True G137017
TU161862 lncRNA downstream 180978 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 343016 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 344883 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 347290 22471041 ~ 22471330 (+) True G137088
XM_026925235.2 mRNA upstream 184043 21903886 ~ 21908552 (+) True LOC113533243
XM_034306618.1 mRNA upstream 189357 21860308 ~ 21903238 (+) False ift122
XM_026925888.2 mRNA upstream 189358 21860308 ~ 21903237 (+) True ift122
XM_034306734.1 mRNA upstream 247637 21825682 ~ 21844958 (+) True LOC113533434
XM_026925798.2 mRNA upstream 267751 21808021 ~ 21824844 (+) True wu:fl23c11
XM_026925928.2 mRNA downstream 21338 22145089 ~ 22148333 (+) True b3galt4
XM_026925929.2 mRNA downstream 21338 22145089 ~ 22148333 (+) False b3galt4
XM_034306843.1 mRNA downstream 40227 22163978 ~ 22170747 (+) True LOC113533433
XM_026925368.2 mRNA downstream 50378 22174129 ~ 22181491 (+) True LOC113533311
XM_026925196.2 mRNA downstream 64069 22187820 ~ 22194724 (+) True LOC113533223
trnaa-ugc_5 other upstream 402103 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 402499 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 402857 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 404004 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 404400 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1124597 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1390835 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1626666 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1887866 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1887866 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile