RNA id: XM_026925329.2


Basic Information

Item Value
RNA id XM_026925329.2
length 5117
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC113533283
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22092595 ~ 22123751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCAATCACACACAGGAGGCGGGCTTTGCCTTAATACTGGTAGGGGAAAAAATAACTCTCAGTCTGACCCAGTTGGAGTTACCTTGTTATGAGCTGTCAgagtatttacagccaaaagtaGCTGTTGACGGAGCTCGAGATTTGCTTTGGTGAGATTTTCGTTATCATTTCAGACACTTGTTTGTGTGAgAATAGAAAACTACACCCTGTAGAACATTgcaatgtgactgaATTTCCTGTGCAAATGTTTGTCACCCCCTGATCTTGCACATACAGTGATGGAGGGGCTCCGGGGTGTTCAGGTGTGGCACGATCTACAAATGCCATCTTCTCCGCTATAACCCACCCGGCACGTCTGTTTTGACCTCCGCGGACCTCATGGCCTCCAGTTACGCTGCTCAGTTAGACGGCTCAGCCGAAGTGAAGGAGGGCTTCCTTTGCCCTTTGTGTCTGAAAGACCTGCAGTCCTTCTACCAGCTGCAGGATCACTACGAAGAAGCGCACTCCGGAGACAACCGCCATGTCAGTGGCCAACTCAAGAGCCTGGTGCAGAAAGCAAAGAAAGCCAAAGACAAACTCCTGAAACGGGATGGAGATGAGAGAACTGAGAGCAGCTATGAGTCCTTTTACTATGGAGGCGTGGATCCCTACATGTGGGAGCCTCAAGAACTGGGAGCCACTCGGAGTCATCTGGAACTTTTTAAGAAACACAGAGCTGCTAGGATTGACCATTACGTCATTGAGGTCAACAAGCGCATCATCAGGTTGGAGAAGctTATTTCTTTTGATAGAACCAATATGGATGGTGGGAAGATAAGAGCATTAGAGAAGTCAGTTGTGCCATGGGTGAATGATCAGGACGTACCATTCTGCCCTGATTGTGGGGACAGGTTTAACATCAGGAACCGGCGTCATCACTGCCGTCTCTGTGGTTCCATCATGTGCAGAAAGTGCATGGAATTTGTGCCTCTCCCTCTGGCATATAAGTTAACGAGCGGCACGCGAGAGGCCCTGTGTGTGCCTGGCAGTCCCAGGCAGGGTGCGTCCCCTGGTGGAGGAGGCCCCACGGTGCAGCAGACCTCACGGCGCGgctccatcaccagcctctcctcaGTGAGCTCCGTGCTGGAGGAGAAAGACGAGGACCGAATTCGTTGCTGTCGCCACTGCATGGACGCTCTGCTCCGTTACCAGCACAAACTGGAGGAGAAAGACCACGTGCCAGACATCGTCAAACTCTACGAGAGGTTGAGGATGTGCATGGAGAAAGTGGACGAGAGGGCGCCGGAGTACATCCGCATGGCCGAGTCGCTCAATGCTGGTGAGACCACCTATAACCTAGAAACTGCAGCTGGCCTCCGGATGGAGGTGCAGAAATACTATGAGCACATCGATGCTCTAAGTAAGAAGATTCTAACACTTGGACTAAAAGATGAGGTGCCACCCCATCCAAAAACTGTCCAGCTGCAGAAGATGGTGCGCTACTCAGCGACGCTGTTTGTTCAGGAGAAGTTGTTGGGCCTGATGTCTCTTCCTACAAAAGAGAAATATGAGgagctgaaagagaaaagaaaagaagaacaggAAAAGAAGCTTCAGCAGGAGAGACAGGCGGCTCTGGAAGCACAAAAGCGTCGACTGGAAATAGAGAAGAACCGTGCAACCCACAGTGCCAACGGAGACGCCCCTCGGCCCCCACCAGGCCCTCGCATGAGTAAAGGCGGCGGCTGGTTGCCTTCTTCGACTTCTCGCTCAGCCAAAGAACTGGACGACCCGCTGCTGCAGCAGATTAACAACATCGAGTCGTTCCTCCAGCAGGCACGAGCAGCAAATCGCACCGATGAGGCAGCCATGCTGGAGGAGAACCTGCGACAGCTGCAGGAGGAGTTCGACGCTCAGCAGATGAGCCGAGCAATTGAGATCTCACAACGTCAAGCCCAGGAGGAGGACCTACAAAGAAGCCAGatccttcatcttcagcaaaGGGAGCTGGAGAGCAAAATGACCAGAATGAACTCCTCAGATTTGGGGGATTCAAAGAATGTCGAAGAACACTgggagaaggaaggagagagtgGGTGGGATTTGGAAACAAGTCCACAACTCAAAACTTTGTCAATAAACTCATTTCCACGTTTGCCAGGCAATTCGCCACCTTTACAGCGAGATGAATGCACTACAACTCCCCCTGATGGAGAGGCTTCACTAAATCCGTTTGATGAAGAAGACTGCACTCCGGTTGAGGAAGACTCCACAAACCCTTTCAGTGAAGAGATccagagagagcagcagcagaaaGCTGTTGGAAAACCCAAAGAATACAACCCTTTCGAGGACGGTGAGGATGAGGAGCAGGAACTAGATGATGGGAAGAAAAGTTCTTCCAGAAACCCCTTTGAGGACGATATTGAGGATGATGACAAAGGTAACCCCTTCAAAGAGACATCAGACGAGACGCCATCCGCCTCAACCAATCCCtttgaagatgatgatgacagtaCAGCACTGGACGACATAATTGAGGAAGAGCTGTTGCTTCAGCAGATCGACAACATCCGCGCGTACATATTTGATGCCAAGCTCAGCGGACGCACAGATGAAGTGGAGCTACTGTCCCAAAACCTGAGGGAGCTACAGAGCACTTTACAggagcagaagaaaaaaacgcACTGACCACTGTCCCTTTGTGTCCCTCTTAAAAGTTTTTCTTCTGTTGGGACCAGGACACTGGAAGTAAAGATACATTTGAAGTGTTGTATGTTTTGCCATTTGTTTCAGTCACTAGTACTGATTGTTGGAATGCACCTATAACTGAGAGATCTAAAGCTGAAGAAAATTGGATAAGACAAAGACTTAGCTGGTAACATTTATACATAGAATTTCTAATGTTAGTCATACATGAACAAACCATTTGGTCTTTGTCATTATCTTGGTTATATTAGGTCataaagatgtttattttaggTGTAAGGTttattgggcctcatttatcaatctttaaGTGAAGCGTGTGTAAAATGCCTGCTAGATTTAGAACACTTTTGGTAACGCTAATTTTCTTCAAACTAACGTGTGCATGTTGGCGAATGCTATTCACCTATAAATTACCAAAATGCCTTCACAGCACAGATGATTTACGCTTAGTGACACCCCAAAACCAAAGGTAAAGCTCACAGGATGCTGAAAACGACATAATGACGACTAAACAGCAAAAGCGCCTTCTAAGAGCAGACTGCGCTAAATCtcccaataatgcagctcagccactgcaatGCACACACTAAGGCCTGGTACATACTCCATGCAAGCCAGTACATGCAACAACAAAAGGGGCTCCACAAGGGGTGTCCTTGGACTATGCATGTAGAATTTGTGTATGTCCAAAATCTGCACTGCGACGCATTGTTCCAAGCGTTGGCAATAGAGCCGCTATATACGAACATTACCCCAGGTACAtcaaaatcaaagaaaaatgcatttccGTAAATAGTAGCCATTTCTCTGCCACTTTTACTTTACTACTTTCTCTTGTGGATCAGCTTACTACTCCGGCAGGGCTCCCGAACGCGCGTAAGATATGTCACGCACTTGCAGTCGTGTTTGCATACACTAGTAGAGTATGTAACGGGcttaactcttcctccttttacaaggcttttgtcctaattgagtagctagtcttatttgtcttcatttatggatttgttttggattgatGTCTTTCAAGTCATTCATGTGAAatgactgagtttcacaaaattgACATTAAGTtagtgtgtaattgaaataaataagcaattcaTACCAACGTAATTCTTATATAAAAGATCGAATATCTAATCGCAATTATGTGATTTAAAGCCTCATTAATGAGTCTTCTTATACTTAAACTTACACAAACTCAGCAGCTCTTGTAGGATACAAAACCTTTTTCTGaattaactggattttcatgattttttttcacacatttcttaTGCAAATGCTCCTGCAAAAGACTTTGTAtgcagtttgataaatgaggcccattgtttggTAATATGGAGGAAACTGCTTATAGATAACACACGTGAGCCAAACCAAcaaatctgttttctttttctaacaaacgcataaaaaacacacaaatgtcaCCACAAGGAAAGTTAAGGCTGACATCAGGTTTCCTCATGATGTACATTTTATAGGTTATATATTTAAAGGATTCTCAATGACTTTGCAATATTCTCGTCATAACACTATTATCAGCATGTTGGAAATGTTGCTTTGTCCAAGGGGTGCACAACATGGCCAAAATACTATCAGGATTATATTTCTCCATGTAAATTTGGTGATTCGTCCGATCGCTAAAGCGCTACAACTGATTGGTcaatttattgattgattgagggCTCATTTGTTTGGCAGTGCATTTCTGctacacaacaaaaaaaatctcatcttggtattatgagaaaaatatttcataattacaGGAAagcatcttattaaaaaaaagagatttctgtttttatagaaTATGtctcataataatgagatgttttctTGTAATAACAACATATTTCCTCATAATGTTTACTTGTAAAACCAGGATGTTTTCTCTTAACTAGACTATTTCCAATTGTAAAAAGATGCTTTTCAAGTAATAAGATGTTTTTTCATAGTAATGAGATGCCTTTCCCAAGCTAAGAAGATGCTGATGATGATTTCTTTTCTTGCATGACAGCAAGACATCTGTGATATCATTGTTGCAAAAGTGAGCATGCCATGATTACCAAATGATATACTGGGAATATATGAGATATATTTTCCCAAGTACTGACAAGGGAATCTGTATTGCTTAAATGAGAGATGGGTAATCAACAGTAGCTGTGTAAGATTTGTAATATGACaaattttatgaacattttatttcgAGATCTACAGTATGTGCCTGCTTTTTTCCCATGAAGAATGTCACTCTAATGCAAAGAACCCCTTCATGTCTGGTGTAACTGCTTTCAGATGTTGTGTACAACATTCATGGGAATGTGCTCCACTGGTTTACGACTTGTTTGAATAATCGCAAGTCATTTGCTGAAACGAACaaattttagtttaattttgaaaagccatt

Function

GO: NA

KEGG:

id description
K12481 RBSN, ZFYVE20; rabenosyn-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161242 lncRNA upstream 251078 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 270894 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 285424 21824989 ~ 21825322 (+) True G136532
TU161219 lncRNA upstream 312938 21797276 ~ 21797808 (+) False LOC113533123
TU161800 lncRNA downstream 25293 22148623 ~ 22149777 (+) True G137017
TU161862 lncRNA downstream 181399 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 343437 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 345304 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 347711 22471041 ~ 22471330 (+) True G137088
XM_026925693.2 mRNA upstream 7390 22100466 ~ 22103356 (+) True trh
XM_026925235.2 mRNA upstream 202194 21903886 ~ 21908552 (+) True LOC113533243
XM_034306618.1 mRNA upstream 207508 21860308 ~ 21903238 (+) False ift122
XM_026925888.2 mRNA upstream 207509 21860308 ~ 21903237 (+) True ift122
XM_034306734.1 mRNA upstream 265788 21825682 ~ 21844958 (+) True LOC113533434
XM_026925928.2 mRNA downstream 21759 22145089 ~ 22148333 (+) True b3galt4
XM_026925929.2 mRNA downstream 21759 22145089 ~ 22148333 (+) False b3galt4
XM_034306843.1 mRNA downstream 40648 22163978 ~ 22170747 (+) True LOC113533433
XM_026925368.2 mRNA downstream 50799 22174129 ~ 22181491 (+) True LOC113533311
XM_026925196.2 mRNA downstream 64490 22187820 ~ 22194724 (+) True LOC113533223
trnaa-ugc_5 other upstream 420254 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 420650 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 421008 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 422155 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 422551 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1125018 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1391256 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1627087 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1888287 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1888287 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile