RNA id: TU161862


Basic Information

Item Value
RNA id TU161862
length 2783
lncRNA type intronic
GC content 0.38
exon number 2
gene id G137057
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22304729 ~ 22307615 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttcatgtatctGACATACTGTGTAGAAATATTATATGTGCTCACTGCATTTTGATGACTAGTTCGTGCAAAGTGTAATTTTGAGTGTAAGTGGTCTTCATAAAGCAAATCATGTGTTTTGAACTATTTTGTGGTGAAAAATTAGAGCTTAAGTTGGGAAGCTTCCTTTCCTAGTGTCTGCCATAGTCCCAAAATATATAACTATAGAAAATAGTTAACCACAAATACCTCCTGTAAAATGCTTCTAGGtagacaataaaataatttagtaaTCCTTATACTGCAAATCTGAACTTCATTGATTTAATGACTTATTTTTAAACCTGAGTGTAAGCTAAACCAGAATAACAGTTTTTATTGAGAACCTAATTAGTGACTAAGATTGAGCCAAGGCTTCCTTATGGTTCACAATTAAAGGAACTAACCTCAGCAGCCTTTAGAAGACTGTGTGATGAATGGCTTTGTTAAATGGAGAACAGCCACCAGGAAACTGCACGTATGCCAGTAAAAGGTCAAGCCAGGCCGCATAGTTCTTGTTGCTTTGACCTCCCAGGATTCCTGAAGACCTCCATCAGCTGTACTGACAGTCAAACGTGTTTATAGAACACTGTGAACGTACAAGTGGAATGACTGAATGGTATTTGTTCTTTGTGTGAGTTGTCTCGTGCGCTCTTTCCAAGGTTcaattgctttgtttttttgatgTTCCTGCTTTGTCATGTGTTTGTCTGTGACTTTCTTGTGTAGCTTAATGCCTCATCTCTTGTTATCGATATTTTTGAAAGACTGTTTGGTGAATATGATTAGATATTTTCTAAGGCATTCAGAACTCATTACATCACAACAGAAAGACAACTGAACATGTTGTCAAGAATTTAACTGCTGGTGACCTTAACACATGGGTTTTATGGttcttaataaaaattaatggcATGGGTAGTTATGTTCAAGCCAAAGTCTCACACAGATGCTCAGTTTTCATCCTGTTTTTGACAAACTGGTGATAACTGGACTGTTTCTTGGATGCATGGACTCAGCAAACAGGTCATGTTTAAACATGGTGATGTGAAACGTAAGAACTGTGTGTTCTAGTGCAATGCAATGAGATGTACTATAGTTCTGTCTTTGCTTCTGCATCTCGGTtggtaattttttatttttctttcaagaCTAGGTGAAATTGTAGTTCATTTTCAATATCACAATGACaaaatgagaaacaggattttttaaaaatacaatttaattaaCCATTCAGTTGTATATAGAACtgtacacattttacattttacacaattcagTGTAACCTATCAGTCAATTTACCAAAAGTaaatttattgttaaaatttaTATAGAGTAtctatcaattttttttccattctaaAATAAGACCTACTCCATTAAAGACATGACTTAATTTGCCTTCTTTATATAACATAAGCCAAGTATGAATCAAAATTCTTGCTCATTGATCAATAGGACAATCTAGGAAGAAAAgcttaaagaaaataaaatatctgagATAAATATCAAAACAACAGCACTTTACAATCATACATCGCTCATCACACATTCAATCCAGAAACATTCTGTAAGAAAAATGCATAGAGATGGTTTTTACCCGGGTAAAGGCAGAAGGCATTAGTGTGTATTGCATAAGGTTTGCATGTGGTTATGGTAAGCAAGGTTAGTTAATATAACTTAAGGAGTGAAGTTCTGGGGTCGGATCTTCATCTCCACCCTTTTGAGGGAGTAGTTTGGTCCATGCCAGCCGTACCAAGTGATTCCATCCGTGTTCTTGGTGTGCATCCCATGGCGATAGAACACACCATTCAGATTTGAGTCCGTGCAGCAGTTGTACCAGTAGCCACCTTGCGAAGTTGGGCACAGTCGTCCACGCACTTGTCATTGTCCTTGTTCTTGGTGCTGAAGTTGGTGTTGTTATGGTAGCGGAGTGAGTCCCCAGCATTCCCGCTGTAGTTGGCAATAAAGAGCTTGTAGCTGTTCAGCTCATTGCTCAACGTGAAGAAACCATACTGAGCATAGCGTGTTGCACCCTCCCAGTCCTGAAACAGGTGACCGATAACAGTAACATTAAGCATATTGCACATTATTAAACACTTAAGGTAAAATAAGCCACGCATTATTGCGACACTCTTACCTCCAGCTCTATGCGGAGCACTGTGGGCTGCCGGGTCAGGCGATAGATGTTCTCATTGCCAAGCCAGAAGTCCCCATTGATTGTACCAAAGCCATTCTTGTACTGCTTCCAATCCCGCTCGAAGCTGGTCAGACCTACTCTACGTCTCTGGATGACTGTCCATCCACCTCCATTTTTCTCCATATCACAGTACACCTGAACACAACAGTGACAAACAGTCAGTAATTAAAATGTGCCATTAAAAGTAACATGCTGTCAGATGAAGAGCTACTAATAACTTACCTCCAGTTCAGGTGTTCCCAGAAATTCATCTTTGGGCAATTTGTAAAGCCCAGAAATTCTGTAGTTCCTGTTGTACAGGGATGCACAGTCATAGATTGCATCTAGGAGAGAATAAATCAAAGGGTTCAGTTATAACGTTTTGAATGGTTAAAAGAAATCATATGAGTTTAGATCTGATTCAATTCCTCATGGGGCAGTCTGGATTTTTATAACCTAATAGCACATTATTCATTAAACCTGAAGGTTGCAGCTTAGAAATTAACCCAGCCAGTTGAAGAGGAAAATTTACTGGGTCCACTTGGAGCCCTACAGTGGTTTGTGCTCTTGTGCTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161800 lncRNA upstream 154952 22148623 ~ 22149777 (+) True G137017
TU161753 lncRNA upstream 180978 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 445061 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 464877 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 479407 21824989 ~ 21825322 (+) True G136532
TU161897 lncRNA downstream 159152 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 161019 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 163426 22471041 ~ 22471330 (+) True G137088
TU162067 lncRNA downstream 201596 22509211 ~ 22509494 (+) False LOC113533405
TU162068 lncRNA downstream 203290 22510905 ~ 22511176 (+) True G137229
XM_034306976.1 mRNA upstream 38100 22252273 ~ 22266629 (+) True qars1
XM_026925197.2 mRNA upstream 92708 22205877 ~ 22212021 (+) True LOC113533224
XM_026925194.2 mRNA upstream 99569 22196749 ~ 22205160 (+) True LOC113533222
XM_026925195.2 mRNA upstream 99569 22196749 ~ 22205160 (+) False LOC113533222
XM_026925196.2 mRNA upstream 110005 22187820 ~ 22194724 (+) True LOC113533223
XM_026925730.2 mRNA downstream 53175 22360790 ~ 22376465 (+) True exosc10
XM_026925660.2 mRNA downstream 70313 22377928 ~ 22409804 (+) True ppih
XM_026925258.2 mRNA downstream 103578 22411193 ~ 22416575 (+) True ybx1
XM_026925823.2 mRNA downstream 190143 22497758 ~ 22499212 (+) True hes2.1
XM_026925544.2 mRNA downstream 200011 22507626 ~ 22509409 (+) True LOC113533405
trnaa-ugc_5 other upstream 614237 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 614633 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 614991 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 616138 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 616534 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 940733 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1206971 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1442802 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1704002 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1704002 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile