RNA id: TU161898


Basic Information

Item Value
RNA id TU161898
length 206
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G137087
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22468634 ~ 22468839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATGGTGCCGAGCTGCTCTTCTTCTCCCCCGTGCTGGACTGACTGGAGTTGGACGAGTCGTAGTTGGATAGTGAGCTGGATGGAGAGCCCATATCGAAACGGGCTGCCGTGTTTAACGTGGCATTTGGAGATGAGTGGCCTGAGTCAGGTTGCTTATACTCCAGATCTGCTGACGGATCCCGCGACAAGACACGATGTTCCACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161897 lncRNA upstream 1605 22466767 ~ 22467029 (+) True G137086
TU161862 lncRNA upstream 161019 22304729 ~ 22307615 (+) True G137057
TU161800 lncRNA upstream 318857 22148623 ~ 22149777 (+) True G137017
TU161753 lncRNA upstream 344883 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 608966 21843187 ~ 21859668 (+) False LOC113533434
TU161899 lncRNA downstream 2202 22471041 ~ 22471330 (+) True G137088
TU162067 lncRNA downstream 40372 22509211 ~ 22509494 (+) False LOC113533405
TU162068 lncRNA downstream 42066 22510905 ~ 22511176 (+) True G137229
TU162073 lncRNA downstream 123394 22592233 ~ 22593268 (+) True G137232
TU162078 lncRNA downstream 166825 22635664 ~ 22636989 (+) False LOC113533432
XM_026925258.2 mRNA upstream 52059 22411193 ~ 22416575 (+) True ybx1
XM_026925660.2 mRNA upstream 58830 22377928 ~ 22409804 (+) True ppih
XM_026925730.2 mRNA upstream 92169 22360790 ~ 22376465 (+) True exosc10
XM_026925220.2 mRNA upstream 109586 22267058 ~ 22359048 (+) False mtor
XM_026925823.2 mRNA downstream 28919 22497758 ~ 22499212 (+) True hes2.1
XM_026925544.2 mRNA downstream 38787 22507626 ~ 22509409 (+) True LOC113533405
XM_026925541.2 mRNA downstream 43233 22512072 ~ 22583841 (+) False acot7
XM_026925542.2 mRNA downstream 44161 22513000 ~ 22583841 (+) True acot7
XM_026925543.2 mRNA downstream 51656 22520495 ~ 22583841 (+) False acot7
trnaa-ugc_5 other upstream 778142 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 778538 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 778896 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 780043 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 780439 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 779509 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1045747 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1281578 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1542778 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1542778 24011617 ~ 24013726 (+) False fkbp1aa