RNA id: XM_026925584.2


Basic Information

Item Value
RNA id XM_026925584.2
length 4858
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113533432
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22594534 ~ 22636989 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgttgtagaagTGACCCTATTCCCCAGCAGTGTTTTGCCTTATAACTTCAGAAGAACTTTCTGAGActcttgttctttttgtttcGGTAGGGGAAAAATGCTAAAACGCGAAAAGATACtcaagaagaaaaggaaatgtcAGTTTAGGGAGTCAGCTCACAAACGGAAGCGTGGTGGATTGAGCAGCATCTGTTCCTGCTTCATTCATTCCCTCCTCCTGGTGCTGAGCCTCAATGGGCGGCGTGAGGAGGCTGCGCGCGCGCCcgaccatcatcaccaccaccaccaccaccacgtCGACACGTTTAACTTCGGCCGTGCGTGGCTTCACATGCACACCATTTCCACACTTGTTTCTGATCAGAATGACTCTCTGGAATGATATAAAGCGCGCGCCATGTTTCTTTATCACAGCCTTCTTTATCTGACGGTTTTATCCGTGTATTCAGAATCGGACACGCCAACTCTGTGGACATATTGATAACAACACGACACCCTGGACGAGCTTTCTGCTATCTCGACGACATTTATTCAAGGATTGCCTAGAGCACTGGCTTGGATCAGTTTTCCTGCTTCTGCTGGCCCCCTTGTTGTTCCTCTTCCTCGTCATTCGCCTCCTCTTCCCAACCCCAGAATCCTCCACCAGTCACAATGCCCACCACTTACTCTATCCAACACATGCAAGAGAAGTTCCAACTTCTCCTGTAGTAATGCCCACTCTGGCCCAGTGCCAGTCTCCACCCGCTGCCCTACCCACCGCTCCTCCTCTTGCCATCCCACCCCTTGCCATTGCCATTGTTGCCATCTGCAGGCTCCTGCACCATGAAGGATGAGGTCATCAGCACCAACGCACTGGCCTGGCTGGTCTGCTCCGGGGTGTCTATCCTGGCCAATGCCTGGGGCATCCTGAGCGTGAGCGCCAAGCAGAAGAAGTGGAAGCCCCTGGAGTTCCTGATCTGCACACTGGCTGGCACGCACATCCTCAACATGGGCATCCCTATCACCATGTACTGCGTCATCCAGCTGCGCCGCCAGCACTCCAATTACGAGTGGAACGAAGGCCTCTGCAAGGTCTTTGTGTCCACCTTCTACACTCTTACTCTGGTCACCTGCTTCTCCGTCACATCGCTTTCCTACCACCGCATGTGGATGGTGCGGTGGCCTGTCAATTACAGGCTGAGCAACACGaagaagcaggctgtgcacacaGTGATGGGTATCTGGATGGTTTCTTTCATCCTGTCCACACTGCCTGCTGTGGGCTGGCACGACACCAGCGAGCGTTTCTACGCCCACGACTGTCGCTTTATAGTGACTGAAATCGGCCTAGGCTTCGGCGTCTGCTTCCTGCTGCTGATCAGTGGCAGTGTAACAATGGGAGTCATCTGCATCGGCATTGCTCTCTTCCAGACGTTCTCCATGCAAACAGGCCACAGTGCTGACAAGAACAAGTTCAACGTGCCCACTATTGTGGTGGAAGACGCACAGGGTAAGCGCCGCTCATCCATTGACGGCTCCGAACCAATCAAGACCTCGCTGCAAATCACATACCTGATCAGCGGCATCGTGTTCATCTATGACTTCCTTACTGGCTTTCCCATTCTGGTGGTGAGCTTTGCCAGTCTGAAGTACGACCGTTCCTACAGCTGGATGGtactgtgtgtgctgtggtgcTCCATAGCCCAGTCCATCCTCCTCCCCATGTTCCTGTGGGCTTGTGACCGCTACCGCGCCGATGTCAAGGTGGTCTGGGAGAAATGCGTGGCCATTATGTCCAACGACGAAGTGGATGAAGAAAACAGCCAGGATGGAGGCATTCATCCGGACTTAATATATGACAGACCTTATGACTATAGCTCCGCTGCTGATATCATGACGGTAGACCGTATTGCCAAGTACGAATTCTCAACCTTAGAAAGGGGGGTCCCCCAGTGTTATCCATTGAGGGAGCCTCAGGAAGATAAAATGCACTATTTGCAGGTGCCCCCTACAAGAAGATACTCCCACGACGAAACCGACATGTGGACCACAGGGCCGATTCCTTCCTACCTGCACCGCTGGGGCTCCACGGAGGACATGATGGGTGTGCCACGTTACACCTCGAACCGCCACGAGAGGCGGCGCAGCAGCCTGGCATCGTGCCACGAGGAGAGCAGCCGCCATCAACGCGCACGTAGGAGCTCCGATGGGACACGCTCTCTCCCGCGACCCCAGCGCTCTGAGGACAATTTGGGGTGCTTCAGCCGTGACGAGGTGATCAACTTCATAGACGAAACACCTCTGGCCAGCCCAATCAGGAGCCCCCGCCGTGCATCGGCGCTCTCATTAGTGGCCAGCGCTCAAGAGCGCCAGATTATCCTGCTACCACATTTCCCGCTCACACATTTCGAGCGGGAGCCTCAGGCCTTGCGACGCGCCTCTGAACACAAGGTTTCACGCACTGAACTGCATCAGGGCTCACCCAGAAGGGACAGTAACAGCAGGGGGAGAGCAGAAGAAGTGAGTTTGAGCGAATGTGGATCTGATAAAGGGTGTCGTGAGCAGCGGGGGGATGGAAAACGTGCGTCTGAACTGATTTTAACAGGCCAGAGCGTTTGGACAGCAGCACACTCGTCACTCAGGGGAAAATCAGGACAAGGGGAAGCGCATGTGACTAAGAGCGAAATCCAAGGGAGCATGAACAGTTTTAGAAACTCACAATCACCATCGTCGAGATATACTGCATTTCACTCCGGTTCCATTGGATCGACAACCTAAGATCCTGGAGCTTTTATTAATATACATCCTACACACATCTCTTATTATTGATATGAGTATTCTTGTTATACATATTCAAGTGGAATGTTTTTGTAATATGGGCGCTTCGTGATTGAGTCTTGAGAAGTGGTCTAAGGCAGAGATACTTACATTCTTTTAtagctatttttaaatgttacaaatatacaaaacatgATAGTCTTGTATTGCATTCTTTGGAGTTACTATTTCAACTTAAAGAGAATCATGAGAGTAGAAAGGGCCTTTTTTCAGCTGGTGTTTACAATAGCCACAACTAGGCATTCAAACTTTTTACTGGATTCCGATTCCACTCTTTTCACTGTTTCTGTTGTTTATGGTTGTGTGgtatgttattacattattttataaaatgattcTATAAATGTACAGTAGATATTATATGATTtgcaccaaaaaacaaaacaaggctTGTTTCGtgtaatcattttcattttcagtatttttatttcatgcacAAAAGTTTTCAAATGATTTGTCTAGAGAAGAAGTTAAAGTTTCAGATTTAAAGTAAATGTCATCATCCACCAAACCAAAGTTTACTGCTCAAATTTGTTTTAAAGTAATGGATGCCTTTGAGATATTTAAGAACATTTGGGGGGACATTTGATTGGTGGAGTAAAACCAGTTTCTTTGTCAGAGAAGGCTGTTgtttccataatttttttttttttaattatcttaaATGAGTTCTTAACCCCAACAATTCAGTTTTgccaattgttttttttttttttcctttcctgagAATGAAAATATGTATTTGCCTATGTACAGTAAATGCCACACATGGTTATTTATCCATTAAATCACCACAATTCTATTTGAACTCAACTCTGCTGCCTCGGTCCTGCATTACTCTCTACCAGTGCTAGTACCCTCCACtcttctctgcttttctctgcttttattcatcttcatcCCTCTTTTTGTCCACTGATAATATACAGTTTCCTCCATAACAAAAAGTTTCACATGACTGAAAAAGTTGGAAATTTGCCAGGAATTGGACTCATGAGCATGCTGTTTCCCTACACATTGAGTTGAATGGTGAAGGAGGGAACCCAAAATATCACAGTTTAGTTGGTTCTTGTGGttgcaaaatgaaaaagttttttaaaaatcaactgTGAAACGCCACTTCCACATCACTTCACCAAACGTCATTCAAATTGCAGTTAAAATTGTGAGTTTTGGTCAGAtgaaacttttaaactttttggcATGTTTTGTGAAAAAAGTGGACTGCAAGGACAAGGAAAAGTATAGTCTgctacctttatttctgagagtgttgGAAAGAgggctttttgttttaattccaCCAGGCAGTAATTCtcatatatttattacacaaaaGAAAGCATGTGGATATATAGTGACTATGTGTTTGTCCATGTTTGAGTTATTATTTTAAGAGTGCATTGTTATTATCCTCAAGGAGACCCTGGGACTTGTGTGCAGTAAATAATAATCTGCTTTTCAGAGCGCTTGACTGAACACACTATAATGCTAATCAAAAGTTTTATACTCTGTCCTCCAATCTTGAGGTCTGTTGCTTTTCCAGCAAAGGGCCAACAAAGTTAAACAACAGCCTTGTAAGTTCAGAAGTCTTTGAAAACTTCAAAACACAAGTGCGCATGATGTAggttttacacattattttttatgaatattacatttttactgtaaaaactgtaatctTACTGCAAGAATTTGCTGTTAATTTAATTTGCAAAACATTTCTAAATTGAACACTGGCCTATCCTTGTTTTTAGGAAAACGTGTCAAAGGacatcagggaaaaaaataccAAATACCTTTCATAGTCCTCTTAACCATAAGGCtgcacatgaaaaaaaaccTACAGTATGTGAACCACTAATGTcatgggtatttttatttaatgcagaattcaatgttttaatttattcctGGCATATTCACTGTTTAATGCTGGTTatcatactttttcttcttACACAAAGtccatatactgtatctttTGCAGCTACATGGTGTTTGCGCTGTCTTTTATGAAGGTTGAGTCACTTACAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162073 lncRNA upstream 1267 22592233 ~ 22593268 (+) True G137232
TU162068 lncRNA upstream 83359 22510905 ~ 22511176 (+) True G137229
TU162067 lncRNA upstream 85041 22509211 ~ 22509494 (+) False LOC113533405
TU161899 lncRNA upstream 123205 22471041 ~ 22471330 (+) True G137088
TU161898 lncRNA upstream 125696 22468634 ~ 22468839 (+) True G137087
TU162220 lncRNA downstream 44891 22681865 ~ 22684031 (+) True G137371
TU162259 lncRNA downstream 88188 22725162 ~ 22730142 (+) True G137401
TU162351 lncRNA downstream 280290 22917264 ~ 22919033 (+) True G137486
TU162496 lncRNA downstream 314991 22951965 ~ 22953295 (+) True G137613
TU162497 lncRNA downstream 315133 22952107 ~ 22953295 (+) False G137613
XM_026925541.2 mRNA upstream 10694 22512072 ~ 22583841 (+) False acot7
XM_026925542.2 mRNA upstream 10694 22513000 ~ 22583841 (+) True acot7
XM_026925543.2 mRNA upstream 10694 22520495 ~ 22583841 (+) False acot7
XM_026925544.2 mRNA upstream 85126 22507626 ~ 22509409 (+) True LOC113533405
XM_026925823.2 mRNA upstream 95323 22497758 ~ 22499212 (+) True hes2.1
XM_026925504.2 mRNA downstream 48528 22685502 ~ 22706507 (+) False kank3
XM_026925503.2 mRNA downstream 48529 22685503 ~ 22706507 (+) True kank3
XM_026925118.2 mRNA downstream 225352 22862326 ~ 22867020 (+) True pex10
XM_026925506.2 mRNA downstream 262030 22899004 ~ 22915980 (+) True clcn6
XM_026925507.2 mRNA downstream 262030 22899004 ~ 22915980 (+) False clcn6
trnaa-ugc_5 other upstream 904043 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 904439 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 904797 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 905944 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 906340 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 611374 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 877612 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1113443 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1374643 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1374643 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile